PDB Entry (6b7o) |
||
| ||
PDB ID: 6b7o | Resolution: 1.85 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 29795346 | DOI: 10.1038/s41586-018-0147-6 | |
Protein |
|
Protein Name: Polyubiquitin-C | |
Uniprot ID/ACC: P0CG48 (UBC_HUMAN) | Organism: Homo sapiens (Human) |
Gene Symbol: UBC | Gene ID: 7316 |
Protein Class: LIGASE |
Ligand |
||
Ligand Name: NAD⁺ | ||
Canonical SMILES: NC(=O)c1ccc[n+](c1)[C@@H]1O[C@H](COP(O)(=O)OP(O)(=O)OC[C@H]2O[C@H]([C@H](O)[C@@H]2O)n2cnc3c(N)ncnc23)[C@@H](O)[C@H]1O | ||
Standard InChI: InChI=1S/C21H27N7O14P2/c22-17-12-19(25-7-24-17)28(8-26-12)21-16(32)14(30)11(41-21)6-39-44(36,37)42-43(34,35)38-5-10-13(29)15(31)20(40-10)27-3-1-2-9(4-27)18(23)33/h1-4,7-8,10-11,13-16,20-21,29-32H,5-6H2,(H5-,22,23,24,25,33,34,35,36,37)/p+1/t10-,11-,13-,14-,15-,16-,20-,21-/m1/s1 | ||
HET Code: AR6 | PubChem: 5893 | |
DrugBank: - | ChEMBL: CHEMBL3039307 | |
Molecular Formula: C21H28N7O14P2+ | Mol. Weight: 664.1164 | logP: -3.0159 |
HBD: 8 | HBA: 17 | |
#Rotatable Bonds: 11 | TPSA: 318.26 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Nucleophilic Aliphatic Subsititution | ARG 42 | B | 13.14 | 11.58 | Aminium Ion |
Binding Affinity |
||
- |