PDB Entry (6b7o)
PDB ID: 6b7o Resolution: 1.85 Å Exp. Method: X-RAY DIFFRACTION
PMID: 29795346 DOI: 10.1038/s41586-018-0147-6
Protein
Protein Name: Polyubiquitin-C
Uniprot ID/ACC: P0CG48 (UBC_HUMAN) Organism: Homo sapiens (Human)
Gene Symbol: UBC Gene ID: 7316
Protein Class: LIGASE
Ligand
Ligand Name:   NAD⁺
Canonical SMILES:   NC(=O)c1ccc[n+](c1)[C@@H]1O[C@H](COP(O)(=O)OP(O)(=O)OC[C@H]2O[C@H]([C@H](O)[C@@H]2O)n2cnc3c(N)ncnc23)[C@@H](O)[C@H]1O
Standard InChI:   InChI=1S/C21H27N7O14P2/c22-17-12-19(25-7-24-17)28(8-26-12)21-16(32)14(30)11(41-21)6-39-44(36,37)42-43(34,35)38-5-10-13(29)15(31)20(40-10)27-3-1-2-9(4-27)18(23)33/h1-4,7-8,10-11,13-16,20-21,29-32H,5-6H2,(H5-,22,23,24,25,33,34,35,36,37)/p+1/t10-,11-,13-,14-,15-,16-,20-,21-/m1/s1
HET Code:   AR6 PubChem:   5893
DrugBank:   - ChEMBL:   CHEMBL3039307
Molecular Formula:   C21H28N7O14P2+ Mol. Weight:   664.1164 logP:   -3.0159
HBD:   8 HBA:   17
#Rotatable Bonds:   11 TPSA:   318.26
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Nucleophilic Aliphatic Subsititution ARG 42 B 13.14 11.58 Aminium Ion
Binding Affinity
-