PDB Entry (1mns)
PDB ID: 1mns Resolution: 2.0 Å Exp. Method: X-RAY DIFFRACTION
PMID: 8292591 DOI: 10.1021/bi00169a003
Protein
Protein Name: Mandelate racemase
Uniprot ID/ACC: P11444 (MANR_PSEPU) Organism: Pseudomonas putida (Arthrobacter siderocapsulatus)
Gene Symbol: mdlA Gene ID: 45526288
Protein Class: ISOMERASE
Ligand
Ligand Name:   (R)-Alpha-phenylglycidate
Canonical SMILES:   [O-]C(=O)[C@@]1(CO1)c2ccccc2
Standard InChI:   InChI=1S/C9H8O3/c10-8(11)9(6-12-9)7-4-2-1-3-5-7/h1-5H,6H2,(H,10,11)/p-1/t9-/m1/s1
HET Code:   APG PubChem:   -
DrugBank:   - ChEMBL:   -
Molecular Formula:   C9H7O3- Mol. Weight:   163.04007 logP:   -0.338
HBD:   0 HBA:   3
#Rotatable Bonds:   2 TPSA:   52.66
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Epoxide Opening LYS 166 A 12.42 7.59 Epoxide
Binding Affinity
Database Name Value
PDBBind Ki : 67000 nM