PDB Entry (1mns) |
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PDB ID: 1mns | Resolution: 2.0 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 8292591 | DOI: 10.1021/bi00169a003 | |
Protein |
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Protein Name: Mandelate racemase | |
Uniprot ID/ACC: P11444 (MANR_PSEPU) | Organism: Pseudomonas putida (Arthrobacter siderocapsulatus) |
Gene Symbol: mdlA | Gene ID: 45526288 |
Protein Class: ISOMERASE |
Ligand |
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Ligand Name: (R)-Alpha-phenylglycidate | ||
Canonical SMILES: [O-]C(=O)[C@@]1(CO1)c2ccccc2 | ||
Standard InChI: InChI=1S/C9H8O3/c10-8(11)9(6-12-9)7-4-2-1-3-5-7/h1-5H,6H2,(H,10,11)/p-1/t9-/m1/s1 | ||
HET Code: APG | PubChem: - | |
DrugBank: - | ChEMBL: - | |
Molecular Formula: C9H7O3- | Mol. Weight: 163.04007 | logP: -0.338 |
HBD: 0 | HBA: 3 | |
#Rotatable Bonds: 2 | TPSA: 52.66 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Epoxide Opening | LYS 166 | A | 12.42 | 7.59 | Epoxide |
Binding Affinity |
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Database Name | Value |
PDBBind | Ki : 67000 nM |