PDB Entry (3uq8)
PDB ID: 3uq8 Resolution: 1.7 Å Exp. Method: X-RAY DIFFRACTION
PMID: 22230472 DOI: 10.1021/cb200392g
Protein
Protein Name: DNA ligase
Uniprot ID/ACC: P43813 (DNLJ_HAEIN) Organism: Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Gene Symbol: ligA Gene ID: -
Protein Class: LIGASE
Ligand
Ligand Name:   ADENOSINE MONOPHOSPHATE
Canonical SMILES:   Nc1ncnc2n(cnc12)[C@@H]1O[C@H](COP(O)(O)=O)[C@@H](O)[C@H]1O
Standard InChI:   InChI=1S/C10H14N5O7P/c11-8-5-9(13-2-12-8)15(3-14-5)10-7(17)6(16)4(22-10)1-21-23(18,19)20/h2-4,6-7,10,16-17H,1H2,(H2,11,12,13)(H2,18,19,20)/t4-,6-,7-,10-/m1/s1
HET Code:   AMP PubChem:   6083
DrugBank:   DB00131 ChEMBL:   CHEMBL752
Molecular Formula:   C10H14N5O7P Mol. Weight:   347.06308 logP:   -1.863
HBD:   5 HBA:   10
#Rotatable Bonds:   4 TPSA:   186.07
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Phosphorylation LYS 116 A 36.97 10.16 Phosphate
Binding Affinity
-