PDB Entry (3kgd) |
||
| ||
PDB ID: 3kgd | Resolution: 1.68 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 20399182 | DOI: 10.1016/j.str.2010.01.016 | |
Protein |
|
Protein Name: RNA 3'-terminal phosphate cyclase | |
Uniprot ID/ACC: P46849 (RTCA_ECOLI) | Organism: Escherichia coli (strain K12) |
Gene Symbol: rtcA | Gene ID: 2847707 |
Protein Class: LIGASE |
Ligand |
||
Ligand Name: ADENOSINE MONOPHOSPHATE | ||
Canonical SMILES: Nc1ncnc2n(cnc12)[C@@H]1O[C@H](COP(O)(O)=O)[C@@H](O)[C@H]1O | ||
Standard InChI: InChI=1S/C10H14N5O7P/c11-8-5-9(13-2-12-8)15(3-14-5)10-7(17)6(16)4(22-10)1-21-23(18,19)20/h2-4,6-7,10,16-17H,1H2,(H2,11,12,13)(H2,18,19,20)/t4-,6-,7-,10-/m1/s1 | ||
HET Code: AMP | PubChem: 6083 | |
DrugBank: DB00131 | ChEMBL: CHEMBL752 | |
Molecular Formula: C10H14N5O7P | Mol. Weight: 347.06308 | logP: -1.863 |
HBD: 5 | HBA: 10 | |
#Rotatable Bonds: 4 | TPSA: 186.07 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Phosphorylation | HIS 309 | A | 64.5 | 4.63 | Phosphate |
Binding Affinity |
||
- |