PDB Entry (1pz2) |
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PDB ID: 1pz2 | Resolution: 2.0 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 14517232 | DOI: 10.1093/emboj/cdg494 | |
Protein |
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Protein Name: Intracellular exo-alpha-(1->5)-L-arabinofuranosidase | |
Uniprot ID/ACC: Q9XBQ3 (IABF_GEOSE) | Organism: Geobacillus stearothermophilus (Bacillus stearothermophilus) |
Gene Symbol: abfA | Gene ID: - |
Protein Class: HYDROLASE |
Ligand |
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Ligand Name: arabinose | ||
Canonical SMILES: OC[C@H]1[C@H](O)[C@@H](O)[C@@H](O1)O | ||
Standard InChI: InChI=1S/C5H10O5/c6-1-2-3(7)4(8)5(9)10-2/h2-9H,1H2/t2-,3-,4+,5+/m0/s1 | ||
HET Code: AHR | PubChem: 445935 | |
DrugBank: DB03142 | ChEMBL: CHEMBL1230895 | |
Molecular Formula: C5H10O5 | Mol. Weight: 150.05283 | logP: -2.5823 |
HBD: 4 | HBA: 5 | |
#Rotatable Bonds: 1 | TPSA: 90.15 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Nucleophilic Acyl Substitution | GLU 294 | A | 21.77 | 5.12 | Hemiacetal |
Binding Affinity |
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