PDB Entry (2dc7) |
||
| ||
PDB ID: 2dc7 | Resolution: 1.94 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: - | DOI: - | |
Protein |
|
Protein Name: Cathepsin B | |
Uniprot ID/ACC: P07688 (CATB_BOVIN) | Organism: Bos taurus (Bovine) |
Gene Symbol: CTSB | Gene ID: 281105 |
Protein Class: HYDROLASE |
Ligand |
||
Ligand Name: N-{[(2S,3S)-3-(ETHOXYCARBONYL)OXIRAN-2-YL]CARBONYL}-L-THREONYL-L-ISOLEUCINE | ||
Canonical SMILES: CCOC(=O)[C@H]1O[C@@H]1C(=O)N[C@@H]([C@@H](C)O)C(=O)N[C@@H]([C@@H](C)CC)C(O)=O | ||
Standard InChI: InChI=1S/C16H26N2O8/c1-5-7(3)9(15(22)23)17-13(20)10(8(4)19)18-14(21)11-12(26-11)16(24)25-6-2/h7-12,19H,5-6H2,1-4H3,(H,17,20)(H,18,21)(H,22,23)/t7-,8+,9-,10-,11-,12-/m0/s1 | ||
HET Code: 042 | PubChem: 49866368 | |
DrugBank: DB04579 | ChEMBL: CHEMBL1229521 | |
Molecular Formula: C16H26N2O8 | Mol. Weight: 374.1689 | logP: -1.202 |
HBD: 4 | HBA: 7 | |
#Rotatable Bonds: 10 | TPSA: 154.56 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Epoxide Opening | CYS 29 | A | 15.75 | 14.53 | Epoxide |
Binding Affinity |
|
Database Name | Value |
BindingDB | IC50 : 410 nM |