PDB Entry (2g5p) |
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PDB ID: 2g5p | Resolution: 2.4 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 16759095 | DOI: 10.1021/jm051283e | |
Protein |
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Protein Name: Dipeptidyl peptidase 4 | |
Uniprot ID/ACC: P27487 (DPP4_HUMAN) | Organism: Homo sapiens (Human) |
Gene Symbol: DPP4 | Gene ID: 1803 |
Protein Class: HYDROLASE |
Ligand |
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Ligand Name: 3-tert-butyl-4-{[(2R,5S)-5-[(2S)-2-cyanopyrrolidine-1-carbonyl]pyrrolidin-2-yl]methoxy}benzoic acid | ||
Canonical SMILES: CC(C)(C)c1cc(ccc1OC[C@H]1CC[C@H](N1)C(=O)N1CCC[C@H]1C#N)C(O)=O | ||
Standard InChI: InChI=1S/C22H29N3O4/c1-22(2,3)17-11-14(21(27)28)6-9-19(17)29-13-15-7-8-18(24-15)20(26)25-10-4-5-16(25)12-23/h6,9,11,15-16,18,24H,4-5,7-8,10,13H2,1-3H3,(H,27,28)/t15-,16+,18+/m1/s1 | ||
HET Code: ADF | PubChem: 11292489 | |
DrugBank: - | ChEMBL: CHEMBL382003 | |
Molecular Formula: C22H29N3O4 | Mol. Weight: 399.21582 | logP: 2.69628 |
HBD: 2 | HBA: 5 | |
#Rotatable Bonds: 5 | TPSA: 102.66 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Nucleophilic Addition to a Triple Bond | SER 630 | A | 20.88 | - | Nitrile |
Binding Affinity |
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Database Name | Value |
PDBBind | Ki : 3.8 nM |
BindingDB | Ki : 3.8 nM |