PDB Entry (2y2g) |
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PDB ID: 2y2g | Resolution: 2.05 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 21732689 | DOI: 10.1021/CB2001846 | |
Protein |
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Protein Name: DD-transpeptidase | |
Uniprot ID/ACC: Q7CRA4 (Q7CRA4_STRR6) | Organism: Streptococcus pneumoniae (strain ATCC BAA-255 / R6) |
Gene Symbol: pbp1b | Gene ID: - |
Protein Class: TRANSFERASE |
Ligand |
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Ligand Name: {[(2,6-dimethoxyphenyl)formamido]methyl}boronic acid | ||
Canonical SMILES: COc1cccc(OC)c1C(=O)NCB(O)O | ||
Standard InChI: InChI=1S/C10H14BNO5/c1-16-7-4-3-5-8(17-2)9(7)10(13)12-6-11(14)15/h3-5,14-15H,6H2,1-2H3,(H,12,13) | ||
HET Code: A01 | PubChem: 54330214 | |
DrugBank: - | ChEMBL: CHEMBL2035284 | |
Molecular Formula: C10H14BNO5 | Mol. Weight: 239.0965 | logP: -0.5544 |
HBD: 3 | HBA: 5 | |
#Rotatable Bonds: 5 | TPSA: 88.02 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Borylation | SER 460 | A | 11.5 | - | Boronic Acid |
Binding Affinity |
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