PDB Entry (2y2g)
PDB ID: 2y2g Resolution: 2.05 Å Exp. Method: X-RAY DIFFRACTION
PMID: 21732689 DOI: 10.1021/CB2001846
Protein
Protein Name: DD-transpeptidase
Uniprot ID/ACC: Q7CRA4 (Q7CRA4_STRR6) Organism: Streptococcus pneumoniae (strain ATCC BAA-255 / R6)
Gene Symbol: pbp1b Gene ID: -
Protein Class: TRANSFERASE
Ligand
Ligand Name:   {[(2,6-dimethoxyphenyl)formamido]methyl}boronic acid
Canonical SMILES:   COc1cccc(OC)c1C(=O)NCB(O)O
Standard InChI:   InChI=1S/C10H14BNO5/c1-16-7-4-3-5-8(17-2)9(7)10(13)12-6-11(14)15/h3-5,14-15H,6H2,1-2H3,(H,12,13)
HET Code:   A01 PubChem:   54330214
DrugBank:   - ChEMBL:   CHEMBL2035284
Molecular Formula:   C10H14BNO5 Mol. Weight:   239.0965 logP:   -0.5544
HBD:   3 HBA:   5
#Rotatable Bonds:   5 TPSA:   88.02
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Borylation SER 460 A 11.5 - Boronic Acid
Binding Affinity
-