PDB Entry (4gvh) |
||
| ||
PDB ID: 4gvh | Resolution: 1.45 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 23177201 | DOI: 10.1016/j.chembiol.2012.09.016 | |
Protein |
|
Protein Name: Beta-hexosaminidase | |
Uniprot ID/ACC: Q8ZQ06 (NAGZ_SALTY) | Organism: Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) |
Gene Symbol: nagZ | Gene ID: 1252727 |
Protein Class: HYDROLASE |
Ligand |
||
Ligand Name: 5-fluoro-N-acetyl-alpha-D-glucosamine | ||
Canonical SMILES: CC(=O)N[C@H]([C@@H](O)[C@@H]1O)[C@H](O)O[C@]1(F)CO | ||
Standard InChI: InChI=1S/C8H14FNO6/c1-3(12)10-4-5(13)6(14)8(9,2-11)16-7(4)15/h4-7,11,13-15H,2H2,1H3,(H,10,12)/t4-,5-,6+,7-,8-/m1/s1 | ||
HET Code: 0XY | PubChem: - | |
DrugBank: - | ChEMBL: - | |
Molecular Formula: C8H14FNO6 | Mol. Weight: 239.08052 | logP: -2.7804 |
HBD: 5 | HBA: 6 | |
#Rotatable Bonds: 2 | TPSA: 119.25 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Nucleophilic Acyl Substitution | ASP 248 | A | 52.59 | 7.94 | Hemiacetal |
Binding Affinity |
||
- |