PDB Entry (5w1y)
PDB ID: 5w1y Resolution: 1.7 Å Exp. Method: X-RAY DIFFRACTION
PMID: - DOI: -
Protein
Protein Name: N-lysine methyltransferase KMT5A
Uniprot ID/ACC: Q9NQR1 (KMT5A_HUMAN) Organism: Homo sapiens (Human)
Gene Symbol: KMT5A Gene ID: 387893
Protein Class: TRANSFERASE
Ligand
Ligand Name:   2-(4-methylpiperazin-1-yl)-3-(phenylsulfanyl)naphthalene-1,4-dione
Canonical SMILES:   c1ccccc1SC(C(=O)c(c23)cccc2)=C(C3=O)N4CCN(C)CC4
Standard InChI:   InChI=1S/C21H20N2O2S/c1-22-11-13-23(14-12-22)18-19(24)16-9-5-6-10-17(16)20(25)21(18)26-15-7-3-2-4-8-15/h2-10H,11-14H2,1H3
HET Code:   9SV PubChem:   92131160
DrugBank:   - ChEMBL:   -
Molecular Formula:   C21H20N2O2S Mol. Weight:   364.12454 logP:   3.3169
HBD:   0 HBA:   5
#Rotatable Bonds:   3 TPSA:   40.62
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Michael Addition CYS 311 A 87.33 - Beta-Sulfanylvinyl Carbonyl
Binding Affinity
-