PDB Entry (5w1y) |
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PDB ID: 5w1y | Resolution: 1.7 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: - | DOI: - | |
Protein |
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Protein Name: N-lysine methyltransferase KMT5A | |
Uniprot ID/ACC: Q9NQR1 (KMT5A_HUMAN) | Organism: Homo sapiens (Human) |
Gene Symbol: KMT5A | Gene ID: 387893 |
Protein Class: TRANSFERASE |
Ligand |
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Ligand Name: 2-(4-methylpiperazin-1-yl)-3-(phenylsulfanyl)naphthalene-1,4-dione | ||
Canonical SMILES: c1ccccc1SC(C(=O)c(c23)cccc2)=C(C3=O)N4CCN(C)CC4 | ||
Standard InChI: InChI=1S/C21H20N2O2S/c1-22-11-13-23(14-12-22)18-19(24)16-9-5-6-10-17(16)20(25)21(18)26-15-7-3-2-4-8-15/h2-10H,11-14H2,1H3 | ||
HET Code: 9SV | PubChem: 92131160 | |
DrugBank: - | ChEMBL: - | |
Molecular Formula: C21H20N2O2S | Mol. Weight: 364.12454 | logP: 3.3169 |
HBD: 0 | HBA: 5 | |
#Rotatable Bonds: 3 | TPSA: 40.62 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Michael Addition | CYS 311 | A | 87.33 | - | Beta-Sulfanylvinyl Carbonyl |
Binding Affinity |
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