PDB Entry (5o40) |
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PDB ID: 5o40 | Resolution: 1.5 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 29703933 | DOI: 10.1038/s41467-018-04114-x | |
Protein |
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Protein Name: Superoxide dismutase [Cu-Zn] | |
Uniprot ID/ACC: P00441 (SODC_HUMAN) | Organism: Homo sapiens (Human) |
Gene Symbol: SOD1 | Gene ID: 6647 |
Protein Class: OXIDOREDUCTASE |
Ligand |
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Ligand Name: Ebselen | ||
Canonical SMILES: c1cccc(c12)[se]n(c2=O)-c3ccccc3 | ||
Standard InChI: InChI=1S/C13H9NOSe/c15-13-11-8-4-5-9-12(11)16-14(13)10-6-2-1-3-7-10/h1-9H | ||
HET Code: 9JT | PubChem: 3194 | |
DrugBank: DB12610 | ChEMBL: CHEMBL51085 | |
Molecular Formula: C13H9NOSe | Mol. Weight: 274.98492 | logP: 2.0477 |
HBD: 0 | HBA: 2 | |
#Rotatable Bonds: 1 | TPSA: 22.0 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Ring Opening | CYS 111 | A | 23.2 | 12.57 | Isoselenazolinone |
Binding Affinity |
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