PDB Entry (5o40)
PDB ID: 5o40 Resolution: 1.5 Å Exp. Method: X-RAY DIFFRACTION
PMID: 29703933 DOI: 10.1038/s41467-018-04114-x
Protein
Protein Name: Superoxide dismutase [Cu-Zn]
Uniprot ID/ACC: P00441 (SODC_HUMAN) Organism: Homo sapiens (Human)
Gene Symbol: SOD1 Gene ID: 6647
Protein Class: OXIDOREDUCTASE
Ligand
Ligand Name:   Ebselen
Canonical SMILES:   c1cccc(c12)[se]n(c2=O)-c3ccccc3
Standard InChI:   InChI=1S/C13H9NOSe/c15-13-11-8-4-5-9-12(11)16-14(13)10-6-2-1-3-7-10/h1-9H
HET Code:   9JT PubChem:   3194
DrugBank:   DB12610 ChEMBL:   CHEMBL51085
Molecular Formula:   C13H9NOSe Mol. Weight:   274.98492 logP:   2.0477
HBD:   0 HBA:   2
#Rotatable Bonds:   1 TPSA:   22.0
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Ring Opening CYS 111 A 23.2 12.57 Isoselenazolinone
Binding Affinity
-