PDB Entry (5vqy)
PDB ID: 5vqy Resolution: 2.35 Å Exp. Method: X-RAY DIFFRACTION
PMID: 28827354 DOI: 10.1073/pnas.1711463114
Protein
Protein Name: Gag-Pol polyprotein
Uniprot ID/ACC: P03366 (POL_HV1B1) Organism: Human immunodeficiency virus type 1 group M subtype B (isolate BH10) (HIV-1)
Gene Symbol: gagpol Gene ID: -
Protein Class: HYDROLASE
Ligand
Ligand Name:   JLJ684
Canonical SMILES:   N#Cc(c1)ccc(c12)c(N(C)C(=O)C=C)cc(c2C)Oc3c(cccc3)OCCn4ccc(=O)[nH]c4=O
Standard InChI:   InChI=1S/C28H24N4O5/c1-4-27(34)31(3)22-16-25(18(2)21-15-19(17-29)9-10-20(21)22)37-24-8-6-5-7-23(24)36-14-13-32-12-11-26(33)30-28(32)35/h4-12,15-16H,1,13-14H2,2-3H3,(H,30,33,35)
HET Code:   9J1 PubChem:   129626290
DrugBank:   - ChEMBL:   CHEMBL4578515
Molecular Formula:   C28H24N4O5 Mol. Weight:   496.17468 logP:   3.89
HBD:   1 HBA:   7
#Rotatable Bonds:   8 TPSA:   117.42
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Michael Addition CYS 181 A 46.44 13.36 Vinyl Carbonyl
Binding Affinity
Database Name Value
PDBBind IC50 : 510 nM