PDB Entry (5vqy) |
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PDB ID: 5vqy | Resolution: 2.35 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 28827354 | DOI: 10.1073/pnas.1711463114 | |
Protein |
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Protein Name: Gag-Pol polyprotein | |
Uniprot ID/ACC: P03366 (POL_HV1B1) | Organism: Human immunodeficiency virus type 1 group M subtype B (isolate BH10) (HIV-1) |
Gene Symbol: gagpol | Gene ID: - |
Protein Class: HYDROLASE |
Ligand |
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Ligand Name: JLJ684 | ||
Canonical SMILES: N#Cc(c1)ccc(c12)c(N(C)C(=O)C=C)cc(c2C)Oc3c(cccc3)OCCn4ccc(=O)[nH]c4=O | ||
Standard InChI: InChI=1S/C28H24N4O5/c1-4-27(34)31(3)22-16-25(18(2)21-15-19(17-29)9-10-20(21)22)37-24-8-6-5-7-23(24)36-14-13-32-12-11-26(33)30-28(32)35/h4-12,15-16H,1,13-14H2,2-3H3,(H,30,33,35) | ||
HET Code: 9J1 | PubChem: 129626290 | |
DrugBank: - | ChEMBL: CHEMBL4578515 | |
Molecular Formula: C28H24N4O5 | Mol. Weight: 496.17468 | logP: 3.89 |
HBD: 1 | HBA: 7 | |
#Rotatable Bonds: 8 | TPSA: 117.42 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Michael Addition | CYS 181 | A | 46.44 | 13.36 | Vinyl Carbonyl |
Binding Affinity |
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Database Name | Value |
PDBBind | IC50 : 510 nM |