PDB Entry (5o1s)
PDB ID: 5o1s Resolution: 1.9 Å Exp. Method: X-RAY DIFFRACTION
PMID: 30341347 DOI: 10.1038/s41467-018-06787-w
Protein
Protein Name: Ribosomal protein S6 kinase alpha-3
Uniprot ID/ACC: P18654 (KS6A3_MOUSE) Organism: Mus musculus (Mouse)
Gene Symbol: Rps6ka3 Gene ID: 110651
Protein Class: TRANSFERASE
Ligand
Ligand Name:   Dimethyl fumarate
Canonical SMILES:   COC(=O)/C=C/C(=O)OC
Standard InChI:   InChI=1S/C6H8O4/c1-9-5(7)3-4-6(8)10-2/h3-4H,1-2H3/b4-3+
HET Code:   9HB PubChem:   637568
DrugBank:   DB08908 ChEMBL:   CHEMBL2107333
Molecular Formula:   C6H8O4 Mol. Weight:   144.04225 logP:   -0.1114
HBD:   0 HBA:   4
#Rotatable Bonds:   2 TPSA:   52.6
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Michael Addition CYS 599 A 62.39 11.93 Vinyl Carbonyl
Binding Affinity
Database Name Value
PDBBind IC50 : 225000 nM