PDB Entry (5o1s) |
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PDB ID: 5o1s | Resolution: 1.9 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 30341347 | DOI: 10.1038/s41467-018-06787-w | |
Protein |
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Protein Name: Ribosomal protein S6 kinase alpha-3 | |
Uniprot ID/ACC: P18654 (KS6A3_MOUSE) | Organism: Mus musculus (Mouse) |
Gene Symbol: Rps6ka3 | Gene ID: 110651 |
Protein Class: TRANSFERASE |
Ligand |
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Ligand Name: Dimethyl fumarate | ||
Canonical SMILES: COC(=O)/C=C/C(=O)OC | ||
Standard InChI: InChI=1S/C6H8O4/c1-9-5(7)3-4-6(8)10-2/h3-4H,1-2H3/b4-3+ | ||
HET Code: 9HB | PubChem: 637568 | |
DrugBank: DB08908 | ChEMBL: CHEMBL2107333 | |
Molecular Formula: C6H8O4 | Mol. Weight: 144.04225 | logP: -0.1114 |
HBD: 0 | HBA: 4 | |
#Rotatable Bonds: 2 | TPSA: 52.6 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Michael Addition | CYS 599 | A | 62.39 | 11.93 | Vinyl Carbonyl |
Binding Affinity |
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Database Name | Value |
PDBBind | IC50 : 225000 nM |