PDB Entry (5zk4)
PDB ID: 5zk4 Resolution: 2.03 Å Exp. Method: X-RAY DIFFRACTION
PMID: 29870659 DOI: 10.1021/jacs.8b04162
Protein
Protein Name: Acyl-carrier-protein] S-malonyltransferase
Uniprot ID/ACC: Q4U443 (Q4U443_SORCE) Organism: Sorangium cellulosum (Polyangium cellulosum)
Gene Symbol: dszD Gene ID: -
Protein Class: TRANSFERASE
Ligand
Ligand Name:   N-[2-(bromoacetylamino)ethyl]-N~3~-[(2R)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alaninamide
Canonical SMILES:   CC(C)(COP(O)(O)=O)[C@@H](O)C(=O)NCCC(=O)NCCNC(=O)CBr
Standard InChI:   InChI=1S/C13H25BrN3O8P/c1-13(2,8-25-26(22,23)24)11(20)12(21)17-4-3-9(18)15-5-6-16-10(19)7-14/h11,20H,3-8H2,1-2H3,(H,15,18)(H,16,19)(H,17,21)(H2,22,23,24)/t11-/m0/s1
HET Code:   9EF PubChem:   -
DrugBank:   - ChEMBL:   -
Molecular Formula:   C13H25BrN3O8P Mol. Weight:   461.05627 logP:   -1.3836
HBD:   6 HBA:   6
#Rotatable Bonds:   12 TPSA:   174.29
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Nucleophilic Aliphatic Subsititution CYS 86 A 10.54 13.67 Halomethyl Carbonyl
Binding Affinity
-