PDB Entry (5npf)
PDB ID: 5npf Resolution: 1.38 Å Exp. Method: X-RAY DIFFRACTION
PMID: 28776021 DOI: 10.1021/acscentsci.7b00214
Protein
Protein Name: Glucosylceramidase
Uniprot ID/ACC: F6BL85 (F6BL85_THEXL) Organism: Thermoanaerobacterium xylanolyticum (strain ATCC 49914 / DSM 7097 / LX-11)
Gene Symbol: Thexy_2211 Gene ID: -
Protein Class: HYDROLASE
Ligand
Ligand Name:   1,6-cyclophellitol cyclosulfate
Canonical SMILES:   O1S(=O)(=O)O[C@@H]([C@H]12)[C@H](CO)[C@@H](O)[C@H](O)[C@H]2O
Standard InChI:   InChI=1S/C7H12O8S/c8-1-2-3(9)4(10)5(11)7-6(2)14-16(12,13)15-7/h2-11H,1H2/t2-,3-,4+,5-,6-,7-/m1/s1
HET Code:   945 PubChem:   -
DrugBank:   - ChEMBL:   -
Molecular Formula:   C7H12O8S Mol. Weight:   256.0253 logP:   -3.28
HBD:   4 HBA:   8
#Rotatable Bonds:   1 TPSA:   133.52
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Ring Opening GLU 441 A 17.79 11.15 Alpha-Cyclosulfate
Binding Affinity
Database Name Value
PDBBind IC50 : 58000 nM