PDB Entry (5npf) |
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PDB ID: 5npf | Resolution: 1.38 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 28776021 | DOI: 10.1021/acscentsci.7b00214 | |
Protein |
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Protein Name: Glucosylceramidase | |
Uniprot ID/ACC: F6BL85 (F6BL85_THEXL) | Organism: Thermoanaerobacterium xylanolyticum (strain ATCC 49914 / DSM 7097 / LX-11) |
Gene Symbol: Thexy_2211 | Gene ID: - |
Protein Class: HYDROLASE |
Ligand |
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Ligand Name: 1,6-cyclophellitol cyclosulfate | ||
Canonical SMILES: O1S(=O)(=O)O[C@@H]([C@H]12)[C@H](CO)[C@@H](O)[C@H](O)[C@H]2O | ||
Standard InChI: InChI=1S/C7H12O8S/c8-1-2-3(9)4(10)5(11)7-6(2)14-16(12,13)15-7/h2-11H,1H2/t2-,3-,4+,5-,6-,7-/m1/s1 | ||
HET Code: 945 | PubChem: - | |
DrugBank: - | ChEMBL: - | |
Molecular Formula: C7H12O8S | Mol. Weight: 256.0253 | logP: -3.28 |
HBD: 4 | HBA: 8 | |
#Rotatable Bonds: 1 | TPSA: 133.52 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Ring Opening | GLU 441 | A | 17.79 | 11.15 | Alpha-Cyclosulfate |
Binding Affinity |
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Database Name | Value |
PDBBind | IC50 : 58000 nM |