PDB Entry (5ngf) |
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PDB ID: 5ngf | Resolution: 2.33 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 29045389 | DOI: 10.1038/nature24451 | |
Protein |
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Protein Name: Ubiquitin carboxyl-terminal hydrolase 7 | |
Uniprot ID/ACC: Q93009 (UBP7_HUMAN) | Organism: Homo sapiens (Human) |
Gene Symbol: USP7 | Gene ID: 7874 |
Protein Class: HYDROLASE |
Ligand |
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Ligand Name: FT827 | ||
Canonical SMILES: Cn1ncc(c12)c(=O)n(cn2)CC3(O)CCN(CC3)C(=O)c4ccc(cc4)-c5ccccc5NS(=O)(=O)C=C | ||
Standard InChI: InChI=1S/C27H28N6O5S/c1-3-39(37,38)30-23-7-5-4-6-21(23)19-8-10-20(11-9-19)25(34)32-14-12-27(36,13-15-32)17-33-18-28-24-22(26(33)35)16-29-31(24)2/h3-11,16,18,30,36H,1,12-15,17H2,2H3 | ||
HET Code: 8WN | PubChem: 121435663 | |
DrugBank: - | ChEMBL: - | |
Molecular Formula: C27H28N6O5S | Mol. Weight: 548.1842 | logP: 2.3495 |
HBD: 2 | HBA: 9 | |
#Rotatable Bonds: 7 | TPSA: 139.42 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Michael Addition | CYS 223 | A | 40.4 | 11.56 | Vinyl Sulfonyl |
Binding Affinity |
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Database Name | Value |
PDBBind | Kd : 7800 nM |