PDB Entry (5ngf)
PDB ID: 5ngf Resolution: 2.33 Å Exp. Method: X-RAY DIFFRACTION
PMID: 29045389 DOI: 10.1038/nature24451
Protein
Protein Name: Ubiquitin carboxyl-terminal hydrolase 7
Uniprot ID/ACC: Q93009 (UBP7_HUMAN) Organism: Homo sapiens (Human)
Gene Symbol: USP7 Gene ID: 7874
Protein Class: HYDROLASE
Ligand
Ligand Name:   FT827
Canonical SMILES:   Cn1ncc(c12)c(=O)n(cn2)CC3(O)CCN(CC3)C(=O)c4ccc(cc4)-c5ccccc5NS(=O)(=O)C=C
Standard InChI:   InChI=1S/C27H28N6O5S/c1-3-39(37,38)30-23-7-5-4-6-21(23)19-8-10-20(11-9-19)25(34)32-14-12-27(36,13-15-32)17-33-18-28-24-22(26(33)35)16-29-31(24)2/h3-11,16,18,30,36H,1,12-15,17H2,2H3
HET Code:   8WN PubChem:   121435663
DrugBank:   - ChEMBL:   -
Molecular Formula:   C27H28N6O5S Mol. Weight:   548.1842 logP:   2.3495
HBD:   2 HBA:   9
#Rotatable Bonds:   7 TPSA:   139.42
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Michael Addition CYS 223 A 40.4 11.56 Vinyl Sulfonyl
Binding Affinity
Database Name Value
PDBBind Kd : 7800 nM