PDB Entry (5yd6)
PDB ID: 5yd6 Resolution: 2.34 Å Exp. Method: X-RAY DIFFRACTION
PMID: - DOI: -
Protein
Protein Name: Nuclear receptor subfamily 4 group A member 2
Uniprot ID/ACC: P43354 (NR4A2_HUMAN) Organism: Homo sapiens (Human)
Gene Symbol: NR4A2 Gene ID: 4929
Protein Class: TRANSCRIPTION REGULATOR
Ligand
Ligand Name:   (~{Z})-7-[(1~{R},5~{S})-2-oxidanylidene-5-[(~{E},3~{S})-3-oxidanyloct-1-enyl]cyclopent-3-en-1-yl]hept-5-enoic acid
Canonical SMILES:   CCCCC[C@H](O)\C=C\[C@H]1C=CC(=O)[C@@H]1C\C=C/CCCC(O)=O
Standard InChI:   InChI=1S/C20H30O4/c1-2-3-6-9-17(21)14-12-16-13-15-19(22)18(16)10-7-4-5-8-11-20(23)24/h4,7,12-18,21H,2-3,5-6,8-11H2,1H3,(H,23,24)/b7-4-,14-12+/t16-,17-,18+/m0/s1
HET Code:   8SU PubChem:   5280880
DrugBank:   - ChEMBL:   CHEMBL1084643
Molecular Formula:   C20H30O4 Mol. Weight:   334.21442 logP:   4.0563
HBD:   2 HBA:   3
#Rotatable Bonds:   12 TPSA:   74.6
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Michael Addition CYS 566 A 20.69 14.4 Vinyl Carbonyl
Binding Affinity
-