PDB Entry (5nal) |
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PDB ID: 5nal | Resolution: 2.2 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 28434875 | DOI: 10.1016/j.chembiol.2017.03.015 | |
Protein |
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Protein Name: Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta | |
Uniprot ID/ACC: O43924 (PDE6D_HUMAN) | Organism: Homo sapiens (Human) |
Gene Symbol: PDE6D | Gene ID: 5147 |
Protein Class: HYDROLASE |
Ligand |
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Ligand Name: 4-{3-[N-(cyclohexylmethyl)-4-{[(4-chlorophenyl)methyl](cyclopentyl)sulfamoyl}benzenesulfonamido]propyl}-2,5-dimethyl-1,2-oxazol-2-ium | ||
Canonical SMILES: c1[n+](C)oc(C)c1CCCN(CC2CCCCC2)S(=O)(=O)c3ccc(cc3)S(=O)(=O)N(C4CCCC4)Cc5ccc(Cl)cc5 | ||
Standard InChI: InChI=1S/C33H45ClN3O5S2/c1-26-29(25-35(2)42-26)11-8-22-36(23-27-9-4-3-5-10-27)43(38,39)32-18-20-33(21-19-32)44(40,41)37(31-12-6-7-13-31)24-28-14-16-30(34)17-15-28/h14-21,25,27,31H,3-13,22-24H2,1-2H3/q+1 | ||
HET Code: 8RQ | PubChem: - | |
DrugBank: - | ChEMBL: - | |
Molecular Formula: C33H45ClN3O5S2+ | Mol. Weight: 662.24835 | logP: 6.40322 |
HBD: 0 | HBA: 5 | |
#Rotatable Bonds: 13 | TPSA: 91.78 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Ring Opening | GLU 88 | B | 54.38 | 5.67 | 2‐Methylisoxazolium |
Binding Affinity |
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