PDB Entry (5xdk)
PDB ID: 5xdk Resolution: 2.35 Å Exp. Method: X-RAY DIFFRACTION
PMID: 28881827 DOI: 10.18632/oncotarget.18588
Protein
Protein Name: Epidermal growth factor receptor
Uniprot ID/ACC: P00533 (EGFR_HUMAN) Organism: Homo sapiens (Human)
Gene Symbol: EGFR Gene ID: 1956
Protein Class: TRANSFERASE
Ligand
Ligand Name:   N-[3-[[2-[[4-(4-ethanoylpiperazin-1-yl)-2-methoxy-phenyl]amino]-5-(trifluoromethyl)pyrimidin-4-yl]amino]phenyl]prop-2-enamide
Canonical SMILES:   CC(=O)N1CCN(CC1)c2ccc(c(c2)OC)Nc3ncc(C(F)(F)F)c(n3)Nc4cccc(c4)NC(=O)C=C
Standard InChI:   InChI=1S/C27H28F3N7O3/c1-4-24(39)32-18-6-5-7-19(14-18)33-25-21(27(28,29)30)16-31-26(35-25)34-22-9-8-20(15-23(22)40-3)37-12-10-36(11-13-37)17(2)38/h4-9,14-16H,1,10-13H2,2-3H3,(H,32,39)(H2,31,33,34,35)
HET Code:   8JC PubChem:   57335384
DrugBank:   DB11907 ChEMBL:   CHEMBL3545308
Molecular Formula:   C27H28F3N7O3 Mol. Weight:   555.2206 logP:   4.7842
HBD:   3 HBA:   8
#Rotatable Bonds:   8 TPSA:   111.72
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Michael Addition CYS 797 A 27.07 11.73 Vinyl Carbonyl
Binding Affinity
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