PDB Entry (5xdk) |
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PDB ID: 5xdk | Resolution: 2.35 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 28881827 | DOI: 10.18632/oncotarget.18588 | |
Protein |
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Protein Name: Epidermal growth factor receptor | |
Uniprot ID/ACC: P00533 (EGFR_HUMAN) | Organism: Homo sapiens (Human) |
Gene Symbol: EGFR | Gene ID: 1956 |
Protein Class: TRANSFERASE |
Ligand |
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Ligand Name: N-[3-[[2-[[4-(4-ethanoylpiperazin-1-yl)-2-methoxy-phenyl]amino]-5-(trifluoromethyl)pyrimidin-4-yl]amino]phenyl]prop-2-enamide | ||
Canonical SMILES: CC(=O)N1CCN(CC1)c2ccc(c(c2)OC)Nc3ncc(C(F)(F)F)c(n3)Nc4cccc(c4)NC(=O)C=C | ||
Standard InChI: InChI=1S/C27H28F3N7O3/c1-4-24(39)32-18-6-5-7-19(14-18)33-25-21(27(28,29)30)16-31-26(35-25)34-22-9-8-20(15-23(22)40-3)37-12-10-36(11-13-37)17(2)38/h4-9,14-16H,1,10-13H2,2-3H3,(H,32,39)(H2,31,33,34,35) | ||
HET Code: 8JC | PubChem: 57335384 | |
DrugBank: DB11907 | ChEMBL: CHEMBL3545308 | |
Molecular Formula: C27H28F3N7O3 | Mol. Weight: 555.2206 | logP: 4.7842 |
HBD: 3 | HBA: 8 | |
#Rotatable Bonds: 8 | TPSA: 111.72 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Michael Addition | CYS 797 | A | 27.07 | 11.73 | Vinyl Carbonyl |
Binding Affinity |
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