PDB Entry (5n0m)
PDB ID: 5n0m Resolution: 2.18 Å Exp. Method: X-RAY DIFFRACTION
PMID: 28328217 DOI: 10.1021/acs.jmedchem.7b00274
Protein
Protein Name: Protein-arginine deiminase type-4
Uniprot ID/ACC: Q9UM07 (PADI4_HUMAN) Organism: Homo sapiens (Human)
Gene Symbol: PADI4 Gene ID: 23569
Protein Class: HYDROLASE
Ligand
Ligand Name:   BB-F-amidine
Canonical SMILES:   FCC(=N)NCCC[C@H](NC(=O)c1ccc(cc1)-c1ccccc1)c1nc2ccccc2[nH]1
Standard InChI:   InChI=1S/C26H26FN5O/c27-17-24(28)29-16-6-11-23(25-30-21-9-4-5-10-22(21)31-25)32-26(33)20-14-12-19(13-15-20)18-7-2-1-3-8-18/h1-5,7-10,12-15,23H,6,11,16-17H2,(H2,28,29)(H,30,31)(H,32,33)/t23-/m0/s1
HET Code:   8HT PubChem:   134580784
DrugBank:   - ChEMBL:   CHEMBL4216140
Molecular Formula:   C26H26FN5O Mol. Weight:   443.21213 logP:   5.01757
HBD:   4 HBA:   3
#Rotatable Bonds:   9 TPSA:   93.66
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Nucleophilic Aliphatic Subsititution CYS 645 A 11.49 17.38 Halomethyl Amidine
Binding Affinity
-