PDB Entry (5n0m) |
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PDB ID: 5n0m | Resolution: 2.18 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 28328217 | DOI: 10.1021/acs.jmedchem.7b00274 | |
Protein |
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Protein Name: Protein-arginine deiminase type-4 | |
Uniprot ID/ACC: Q9UM07 (PADI4_HUMAN) | Organism: Homo sapiens (Human) |
Gene Symbol: PADI4 | Gene ID: 23569 |
Protein Class: HYDROLASE |
Ligand |
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Ligand Name: BB-F-amidine | ||
Canonical SMILES: FCC(=N)NCCC[C@H](NC(=O)c1ccc(cc1)-c1ccccc1)c1nc2ccccc2[nH]1 | ||
Standard InChI: InChI=1S/C26H26FN5O/c27-17-24(28)29-16-6-11-23(25-30-21-9-4-5-10-22(21)31-25)32-26(33)20-14-12-19(13-15-20)18-7-2-1-3-8-18/h1-5,7-10,12-15,23H,6,11,16-17H2,(H2,28,29)(H,30,31)(H,32,33)/t23-/m0/s1 | ||
HET Code: 8HT | PubChem: 134580784 | |
DrugBank: - | ChEMBL: CHEMBL4216140 | |
Molecular Formula: C26H26FN5O | Mol. Weight: 443.21213 | logP: 5.01757 |
HBD: 4 | HBA: 3 | |
#Rotatable Bonds: 9 | TPSA: 93.66 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Nucleophilic Aliphatic Subsititution | CYS 645 | A | 11.49 | 17.38 | Halomethyl Amidine |
Binding Affinity |
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