PDB Entry (5n0y)
PDB ID: 5n0y Resolution: 2.23 Å Exp. Method: X-RAY DIFFRACTION
PMID: 28328217 DOI: 10.1021/acs.jmedchem.7b00274
Protein
Protein Name: Protein-arginine deiminase type-4
Uniprot ID/ACC: Q9UM07 (PADI4_HUMAN) Organism: Homo sapiens (Human)
Gene Symbol: PADI4 Gene ID: 23569
Protein Class: HYDROLASE
Ligand
Ligand Name:   AFM-30a
Canonical SMILES:   COc1cccc2n(C)c(nc12)[C@H](CCCNC(=N)CF)NC(=O)c1cccc2CNC(=O)c12
Standard InChI:   InChI=1S/C24H27FN6O3/c1-31-17-9-4-10-18(34-2)21(17)30-22(31)16(8-5-11-27-19(26)12-25)29-23(32)15-7-3-6-14-13-28-24(33)20(14)15/h3-4,6-7,9-10,16H,5,8,11-13H2,1-2H3,(H2,26,27)(H,28,33)(H,29,32)/t16-/m0/s1
HET Code:   8FQ PubChem:   134580796
DrugBank:   - ChEMBL:   CHEMBL4214962
Molecular Formula:   C24H27FN6O3 Mol. Weight:   466.21286 logP:   2.61297
HBD:   4 HBA:   6
#Rotatable Bonds:   9 TPSA:   121.13
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Nucleophilic Aliphatic Subsititution CYS 645 A 12.46 17.23 Halomethyl Amidine
Binding Affinity
-