PDB Entry (5ujo)
PDB ID: 5ujo Resolution: 1.35 Å Exp. Method: X-RAY DIFFRACTION
PMID: 29051683 DOI: 10.1021/acs.organomet.6b00888
Protein
Protein Name: Beta-lactamase
Uniprot ID/ACC: Q9L5C8 (Q9L5C8_ECOLX) Organism: Escherichia coli
Gene Symbol: blaCTXM9a Gene ID: -
Protein Class: HYDROLASE
Ligand
Ligand Name:   Ruthenocenyl-7-Aminodesacetoxycephalosporanic Acid
Canonical SMILES:   [Ru]123456789C%10(C(CCC(N[C@H]%11[C@@H]%12N(C(=C(CS%12)C)C(O)=O)C%11=O)=O)=O)[C]1[C]2[C]3[C]4%10.[C]51[C]6[C]7[C]8[C]91
Standard InChI:   InChI=1S/C17H13N2O5S.C5.Ru/c1-9-8-25-16-13(15(22)19(16)14(9)17(23)24)18-12(21)7-6-11(20)10-4-2-3-5-10;1-2-4-5-3-1;/h13,16H,6-8H2,1H3,(H,18,21)(H,23,24);;/t13-,16-;;/m1../s1
HET Code:   8CY PubChem:   137349708
DrugBank:   - ChEMBL:   -
Molecular Formula:   C22H13N2O5RuS Mol. Weight:   518.95886 logP:   0.54491
HBD:   2 HBA:   5
#Rotatable Bonds:   6 TPSA:   103.78
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Beta-Lactam Addition SER 70 A 10.29 - Beta-Lactam
Binding Affinity
-