PDB Entry (1o43) |
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PDB ID: 1o43 | Resolution: 1.5 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 14613321 | DOI: 10.1021/jm020970s | |
Protein |
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Protein Name: Proto-oncogene tyrosine-protein kinase Src | |
Uniprot ID/ACC: P12931 (SRC_HUMAN) | Organism: Homo sapiens (Human) |
Gene Symbol: SRC | Gene ID: 6714 |
Protein Class: SIGNALING PROTEIN |
Ligand |
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Ligand Name: RU82129 | ||
Canonical SMILES: CC(=O)N\C(=C/c1ccc(CC(O)=O)c(C=O)c1)C(=O)N[C@H]1CCCCN(Cc2ccc(cc2)-c2ccccc2)C1=O | ||
Standard InChI: InChI=1S/C33H33N3O6/c1-22(38)34-30(18-24-12-15-27(19-31(39)40)28(17-24)21-37)32(41)35-29-9-5-6-16-36(33(29)42)20-23-10-13-26(14-11-23)25-7-3-2-4-8-25/h2-4,7-8,10-15,17-18,21,29H,5-6,9,16,19-20H2,1H3,(H,34,38)(H,35,41)(H,39,40)/b30-18-/t29-/m0/s1 | ||
HET Code: 821 | PubChem: 5287555 | |
DrugBank: DB03104 | ChEMBL: CHEMBL356002 | |
Molecular Formula: C33H33N3O6 | Mol. Weight: 567.23694 | logP: 3.9677 |
HBD: 3 | HBA: 5 | |
#Rotatable Bonds: 10 | TPSA: 132.88 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Hemi(thio)acetalization | CYS 44 | A | 11.7 | 12.65 | Aldehyde |
Binding Affinity |
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Database Name | Value |
PDBBind | IC50 : 2200 nM |
BindingDB | IC50 : 2200 nM |