PDB Entry (5mi7)
PDB ID: 5mi7 Resolution: 2.1 Å Exp. Method: X-RAY DIFFRACTION
PMID: 29163914 DOI: 10.1039/c7sc01966a
Protein
Protein Name: O-GlcNAcase BT_4395
Uniprot ID/ACC: Q89ZI2 (OGA_BACTN) Organism: Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482)
Gene Symbol: BT_4395 Gene ID: 31618140
Protein Class: HYDROLASE
Ligand
Ligand Name:   N-[4-(morpholin-4-yl)thieno[2,3-d]pyrimidin-2-yl]prop-2-enamide
Canonical SMILES:   C1COCCN1c(c(c23)ccs2)nc(n3)NC(=O)C=C
Standard InChI:   InChI=1S/C13H14N4O2S/c1-2-10(18)14-13-15-11(17-4-6-19-7-5-17)9-3-8-20-12(9)16-13/h2-3,8H,1,4-7H2,(H,14,15,16,18)
HET Code:   7NT PubChem:   -
DrugBank:   - ChEMBL:   -
Molecular Formula:   C13H14N4O2S Mol. Weight:   290.08374 logP:   1.6524
HBD:   1 HBA:   6
#Rotatable Bonds:   3 TPSA:   67.35
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Michael Addition CYS 550 A 52.13 10.66 Vinyl Carbonyl
Binding Affinity
-