PDB Entry (4fdn)
PDB ID: 4fdn Resolution: 2.4 Å Exp. Method: X-RAY DIFFRACTION
PMID: 22733761 DOI: 10.1073/pnas.1205735109
Protein
Protein Name: Decaprenylphosphoryl-beta-D-ribose oxidase
Uniprot ID/ACC: P9WJF1 (DPRE1_MYCTU) Organism: Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
Gene Symbol: dprE1 Gene ID: 886125
Protein Class: OXIDOREDUCTASE
Ligand
Ligand Name:   CT319
Canonical SMILES:   c1ccccc1[C@H](C)NC(=O)c2cc([N+]([O-])=O)cc(c2)C(F)(F)F
Standard InChI:   InChI=1S/C16H13F3N2O3/c1-10(11-5-3-2-4-6-11)20-15(22)12-7-13(16(17,18)19)9-14(8-12)21(23)24/h2-10H,1H3,(H,20,22)/t10-/m0/s1
HET Code:   0T4 PubChem:   -
DrugBank:   - ChEMBL:   -
Molecular Formula:   C16H13F3N2O3 Mol. Weight:   338.08783 logP:   4.1046
HBD:   1 HBA:   3
#Rotatable Bonds:   4 TPSA:   72.24
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Nucleophilic Addition to a Double Bond CYS 387 A 27.04 12.03 Nitroarene
Binding Affinity
-