PDB Entry (4pnc)
PDB ID: 4pnc Resolution: 1.54 Å Exp. Method: X-RAY DIFFRACTION
PMID: 25293447 DOI: 10.1016/j.bmcl.2014.09.047
Protein
Protein Name: Methionine aminopeptidase
Uniprot ID/ACC: C3TPN7 (C3TPN7_ECOLX) Organism: Escherichia coli
Gene Symbol: map_2 Gene ID: 58463819
Protein Class: HYDROLASE
Ligand
Ligand Name:   7-METHOXY-2-METHYLEN-3,4-DIHYDRONAPHTHALEN-1(2H)-ONE
Canonical SMILES:   COc(cc1)cc(c12)C(=O)C(=C)CC2
Standard InChI:   InChI=1S/C12H12O2/c1-8-3-4-9-5-6-10(14-2)7-11(9)12(8)13/h5-7H,1,3-4H2,2H3
HET Code:   7NP PubChem:   10821453
DrugBank:   - ChEMBL:   CHEMBL3337752
Molecular Formula:   C12H12O2 Mol. Weight:   188.08372 logP:   2.3803
HBD:   0 HBA:   2
#Rotatable Bonds:   1 TPSA:   26.3
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Michael Addition CYS 59 A 17.24 18.73 Vinyl Carbonyl
Binding Affinity
Database Name Value
PDBBind IC50 : 3700 nM