PDB Entry (5m4z)
PDB ID: 5m4z Resolution: 1.18 Å Exp. Method: X-RAY DIFFRACTION
PMID: - DOI: -
Protein
Protein Name: Thymidylate synthase
Uniprot ID/ACC: Q9NDD3 (Q9NDD3_TRISP) Organism: Trichinella spiralis (Trichina worm)
Gene Symbol: ts Gene ID: 10910043
Protein Class: TRANSFERASE
Ligand
Ligand Name:   5-Fluoro-N(4)-hydroxy-2'-deoxycytidine-5'-monophosphate
Canonical SMILES:   ONc1nc(=O)n(cc1F)[C@H]1C[C@H](O)[C@@H](COP(O)(O)=O)O1
Standard InChI:   InChI=1S/C9H13FN3O8P/c10-4-2-13(9(15)11-8(4)12-16)7-1-5(14)6(21-7)3-20-22(17,18)19/h2,5-7,14,16H,1,3H2,(H,11,12,15)(H2,17,18,19)/t5-,6+,7+/m0/s1
HET Code:   7K8 PubChem:   3035987
DrugBank:   - ChEMBL:   CHEMBL1161226
Molecular Formula:   C9H13FN3O8P Mol. Weight:   341.04242 logP:   -1.0588
HBD:   5 HBA:   9
#Rotatable Bonds:   5 TPSA:   163.37
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Nucleophilic Aromatic Substitution CYS 189 A 31.74 14.24 Aryl Halide
Binding Affinity
-