PDB Entry (5tnf)
PDB ID: 5tnf Resolution: 1.75 Å Exp. Method: X-RAY DIFFRACTION
PMID: 28392259 DOI: 10.1016/j.str.2017.03.002
Protein
Protein Name: Putative hydrolase
Uniprot ID/ACC: A0A0H2ZD27 (A0A0H2ZD27_PSEAB) Organism: Pseudomonas aeruginosa (strain UCBPP-PA14)
Gene Symbol: PA14_26090 Gene ID: -
Protein Class: HYDROLASE
Ligand
Ligand Name:   (±)19,20-epoxy-4Z,7Z,10Z,13Z,16Z-docosapentaenoic acid
Canonical SMILES:   CC[C@H]1O[C@@H]1C\C=C/C\C=C/C\C=C/C\C=C/C\C=C/CCC(O)=O
Standard InChI:   InChI=1S/C22H32O3/c1-2-20-21(25-20)18-16-14-12-10-8-6-4-3-5-7-9-11-13-15-17-19-22(23)24/h3-4,7-10,13-16,20-21H,2,5-6,11-12,17-19H2,1H3,(H,23,24)/b4-3-,9-7-,10-8-,15-13-,16-14-/t20-,21-/m1/s1
HET Code:   7HW PubChem:   -
DrugBank:   - ChEMBL:   -
Molecular Formula:   C22H32O3 Mol. Weight:   344.23514 logP:   5.7601
HBD:   1 HBA:   2
#Rotatable Bonds:   14 TPSA:   49.83
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Epoxide Opening ASP 129 A 18.25 8.07 Epoxide
Binding Affinity
-