PDB Entry (5yof)
PDB ID: 5yof Resolution: 1.51 Å Exp. Method: X-RAY DIFFRACTION
PMID: 29526431 DOI: 10.1016/j.str.2018.02.005
Protein
Protein Name: Genome polyprotein
Uniprot ID/ACC: Q32ZE1 (POLG_ZIKV) Organism: Zika virus (ZIKV)
Gene Symbol: - Gene ID: 7751225
Protein Class: HYDROLASE
Ligand
Ligand Name:   (S)-2-acetamido-6-amino-N-((S)-5-guanidino-1-oxopentan-2-yl)hexanamide
Canonical SMILES:   CC(=O)N[C@@H](CCCCN)C(=O)N[C@@H](CCCNC(N)=N)C=O
Standard InChI:   InChI=1S/C14H28N6O3/c1-10(22)19-12(6-2-3-7-15)13(23)20-11(9-21)5-4-8-18-14(16)17/h9,11-12H,2-8,15H2,1H3,(H,19,22)(H,20,23)(H4,16,17,18)/t11-,12-/m0/s1
HET Code:   7HS PubChem:   137348621
DrugBank:   - ChEMBL:   CHEMBL4542342
Molecular Formula:   C14H28N6O3 Mol. Weight:   328.2223 logP:   -1.43293
HBD:   6 HBA:   5
#Rotatable Bonds:   12 TPSA:   163.19
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Hemi(thio)acetalization SER 135 B 10.63 - Aldehyde
Binding Affinity
Database Name Value
PDBBind IC50 : 1500 nM