PDB Entry (5yof) |
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PDB ID: 5yof | Resolution: 1.51 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 29526431 | DOI: 10.1016/j.str.2018.02.005 | |
Protein |
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Protein Name: Genome polyprotein | |
Uniprot ID/ACC: Q32ZE1 (POLG_ZIKV) | Organism: Zika virus (ZIKV) |
Gene Symbol: - | Gene ID: 7751225 |
Protein Class: HYDROLASE |
Ligand |
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Ligand Name: (S)-2-acetamido-6-amino-N-((S)-5-guanidino-1-oxopentan-2-yl)hexanamide | ||
Canonical SMILES: CC(=O)N[C@@H](CCCCN)C(=O)N[C@@H](CCCNC(N)=N)C=O | ||
Standard InChI: InChI=1S/C14H28N6O3/c1-10(22)19-12(6-2-3-7-15)13(23)20-11(9-21)5-4-8-18-14(16)17/h9,11-12H,2-8,15H2,1H3,(H,19,22)(H,20,23)(H4,16,17,18)/t11-,12-/m0/s1 | ||
HET Code: 7HS | PubChem: 137348621 | |
DrugBank: - | ChEMBL: CHEMBL4542342 | |
Molecular Formula: C14H28N6O3 | Mol. Weight: 328.2223 | logP: -1.43293 |
HBD: 6 | HBA: 5 | |
#Rotatable Bonds: 12 | TPSA: 163.19 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Hemi(thio)acetalization | SER 135 | B | 10.63 | - | Aldehyde |
Binding Affinity |
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Database Name | Value |
PDBBind | IC50 : 1500 nM |