PDB Entry (5tnl)
PDB ID: 5tnl Resolution: 1.8 Å Exp. Method: X-RAY DIFFRACTION
PMID: 28392259 DOI: 10.1016/j.str.2017.03.002
Protein
Protein Name: Putative hydrolase
Uniprot ID/ACC: A0A0H2ZD27 (A0A0H2ZD27_PSEAB) Organism: Pseudomonas aeruginosa (strain UCBPP-PA14)
Gene Symbol: PA14_26090 Gene ID: -
Protein Class: HYDROLASE
Ligand
Ligand Name:   1,2-epoxyhexane
Canonical SMILES:   CCCC[C@H]1CO1
Standard InChI:   InChI=1S/C6H12O/c1-2-3-4-6-5-7-6/h6H,2-5H2,1H3/t6-/m0/s1
HET Code:   7FB PubChem:   1549991
DrugBank:   - ChEMBL:   -
Molecular Formula:   C6H12O Mol. Weight:   100.08881 logP:   1.5754
HBD:   0 HBA:   1
#Rotatable Bonds:   3 TPSA:   12.53
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Epoxide Opening ASP 129 A 16.73 7.7 Epoxide
Binding Affinity
-