PDB Entry (5tnk) |
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PDB ID: 5tnk | Resolution: 1.65 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 28392259 | DOI: 10.1016/j.str.2017.03.002 | |
Protein |
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Protein Name: Putative hydrolase | |
Uniprot ID/ACC: A0A0H2ZD27 (A0A0H2ZD27_PSEAB) | Organism: Pseudomonas aeruginosa (strain UCBPP-PA14) |
Gene Symbol: PA14_26090 | Gene ID: - |
Protein Class: HYDROLASE |
Ligand |
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Ligand Name: 1,2-Epoxyoctane | ||
Canonical SMILES: CCCCCC[C@H]1CO1 | ||
Standard InChI: InChI=1S/C8H16O/c1-2-3-4-5-6-8-7-9-8/h8H,2-7H2,1H3/t8-/m0/s1 | ||
HET Code: 7F2 | PubChem: 1620685 | |
DrugBank: - | ChEMBL: - | |
Molecular Formula: C8H16O | Mol. Weight: 128.12012 | logP: 2.3556 |
HBD: 0 | HBA: 1 | |
#Rotatable Bonds: 5 | TPSA: 12.53 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Epoxide Opening | ASP 129 | A | 17.67 | 7.28 | Epoxide |
Binding Affinity |
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