PDB Entry (5tnk)
PDB ID: 5tnk Resolution: 1.65 Å Exp. Method: X-RAY DIFFRACTION
PMID: 28392259 DOI: 10.1016/j.str.2017.03.002
Protein
Protein Name: Putative hydrolase
Uniprot ID/ACC: A0A0H2ZD27 (A0A0H2ZD27_PSEAB) Organism: Pseudomonas aeruginosa (strain UCBPP-PA14)
Gene Symbol: PA14_26090 Gene ID: -
Protein Class: HYDROLASE
Ligand
Ligand Name:   1,2-Epoxyoctane
Canonical SMILES:   CCCCCC[C@H]1CO1
Standard InChI:   InChI=1S/C8H16O/c1-2-3-4-5-6-8-7-9-8/h8H,2-7H2,1H3/t8-/m0/s1
HET Code:   7F2 PubChem:   1620685
DrugBank:   - ChEMBL:   -
Molecular Formula:   C8H16O Mol. Weight:   128.12012 logP:   2.3556
HBD:   0 HBA:   1
#Rotatable Bonds:   5 TPSA:   12.53
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Epoxide Opening ASP 129 A 17.67 7.28 Epoxide
Binding Affinity
-