PDB Entry (5th7)
PDB ID: 5th7 Resolution: 1.95 Å Exp. Method: X-RAY DIFFRACTION
PMID: 27804297 DOI: 10.1021/acs.jmedchem.6b01244
Protein
Protein Name: N-lysine methyltransferase KMT5A
Uniprot ID/ACC: Q9NQR1 (KMT5A_HUMAN) Organism: Homo sapiens (Human)
Gene Symbol: KMT5A Gene ID: 387893
Protein Class: TRANSFERASE
Ligand
Ligand Name:   MS453
Canonical SMILES:   COc1cc2nc(nc(NCCCNC(=O)C=C)c2cc1OC)N1CCCC1
Standard InChI:   InChI=1S/C20H27N5O3/c1-4-18(26)21-8-7-9-22-19-14-12-16(27-2)17(28-3)13-15(14)23-20(24-19)25-10-5-6-11-25/h4,12-13H,1,5-11H2,2-3H3,(H,21,26)(H,22,23,24)
HET Code:   7BY PubChem:   129896910
DrugBank:   - ChEMBL:   -
Molecular Formula:   C20H27N5O3 Mol. Weight:   385.2114 logP:   2.3514
HBD:   2 HBA:   7
#Rotatable Bonds:   9 TPSA:   88.61
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Michael Addition CYS 311 A 60.34 - Vinyl Carbonyl
Binding Affinity
-