PDB Entry (6afg) |
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PDB ID: 6afg | Resolution: 1.5 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 30063823 | DOI: 10.1021/acschembio.8b00701 | |
Protein |
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Protein Name: Parkinson disease protein 7 | |
Uniprot ID/ACC: Q99497 (PARK7_HUMAN) | Organism: Homo sapiens (Human) |
Gene Symbol: PARK7 | Gene ID: 11315 |
Protein Class: HYDROLASE |
Ligand |
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Ligand Name: N-Methylisatin | ||
Canonical SMILES: CN1C(=O)C(=O)c(c12)cccc2 | ||
Standard InChI: InChI=1S/C9H7NO2/c1-10-7-5-3-2-4-6(7)8(11)9(10)12/h2-5H,1H3 | ||
HET Code: 72V | PubChem: 16358 | |
DrugBank: - | ChEMBL: CHEMBL60569 | |
Molecular Formula: C9H7NO2 | Mol. Weight: 161.04768 | logP: 0.8457 |
HBD: 0 | HBA: 2 | |
#Rotatable Bonds: 0 | TPSA: 37.38 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Hemi(thio)acetalization | CYS 106 | A | 13.27 | 15.43 | Ketone |
Binding Affinity |
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Database Name | Value |
PDBBind | Kd : 13700 nM |