PDB Entry (6afg)
PDB ID: 6afg Resolution: 1.5 Å Exp. Method: X-RAY DIFFRACTION
PMID: 30063823 DOI: 10.1021/acschembio.8b00701
Protein
Protein Name: Parkinson disease protein 7
Uniprot ID/ACC: Q99497 (PARK7_HUMAN) Organism: Homo sapiens (Human)
Gene Symbol: PARK7 Gene ID: 11315
Protein Class: HYDROLASE
Ligand
Ligand Name:   N-Methylisatin
Canonical SMILES:   CN1C(=O)C(=O)c(c12)cccc2
Standard InChI:   InChI=1S/C9H7NO2/c1-10-7-5-3-2-4-6(7)8(11)9(10)12/h2-5H,1H3
HET Code:   72V PubChem:   16358
DrugBank:   - ChEMBL:   CHEMBL60569
Molecular Formula:   C9H7NO2 Mol. Weight:   161.04768 logP:   0.8457
HBD:   0 HBA:   2
#Rotatable Bonds:   0 TPSA:   37.38
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Hemi(thio)acetalization CYS 106 A 13.27 15.43 Ketone
Binding Affinity
Database Name Value
PDBBind Kd : 13700 nM