PDB Entry (6aff) |
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PDB ID: 6aff | Resolution: 1.6 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 30063823 | DOI: 10.1021/acschembio.8b00701 | |
Protein |
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Protein Name: Parkinson disease protein 7 | |
Uniprot ID/ACC: Q99497 (PARK7_HUMAN) | Organism: Homo sapiens (Human) |
Gene Symbol: PARK7 | Gene ID: 11315 |
Protein Class: HYDROLASE |
Ligand |
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Ligand Name: Methyl isatin-7-carboxylate | ||
Canonical SMILES: COC(=O)c(ccc1)c(c12)NC(=O)C2=O | ||
Standard InChI: InChI=1S/C10H7NO4/c1-15-10(14)6-4-2-3-5-7(6)11-9(13)8(5)12/h2-4H,1H3,(H,11,12,13) | ||
HET Code: 72U | PubChem: 1946733 | |
DrugBank: - | ChEMBL: CHEMBL1570589 | |
Molecular Formula: C10H7NO4 | Mol. Weight: 205.0375 | logP: 0.608 |
HBD: 1 | HBA: 4 | |
#Rotatable Bonds: 1 | TPSA: 72.47 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Hemi(thio)acetalization | CYS 106 | A | 14.1 | 15.49 | Ketone |
Binding Affinity |
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Database Name | Value |
PDBBind | Kd : 3900 nM |