PDB Entry (6aff)
PDB ID: 6aff Resolution: 1.6 Å Exp. Method: X-RAY DIFFRACTION
PMID: 30063823 DOI: 10.1021/acschembio.8b00701
Protein
Protein Name: Parkinson disease protein 7
Uniprot ID/ACC: Q99497 (PARK7_HUMAN) Organism: Homo sapiens (Human)
Gene Symbol: PARK7 Gene ID: 11315
Protein Class: HYDROLASE
Ligand
Ligand Name:   Methyl isatin-7-carboxylate
Canonical SMILES:   COC(=O)c(ccc1)c(c12)NC(=O)C2=O
Standard InChI:   InChI=1S/C10H7NO4/c1-15-10(14)6-4-2-3-5-7(6)11-9(13)8(5)12/h2-4H,1H3,(H,11,12,13)
HET Code:   72U PubChem:   1946733
DrugBank:   - ChEMBL:   CHEMBL1570589
Molecular Formula:   C10H7NO4 Mol. Weight:   205.0375 logP:   0.608
HBD:   1 HBA:   4
#Rotatable Bonds:   1 TPSA:   72.47
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Hemi(thio)acetalization CYS 106 A 14.1 15.49 Ketone
Binding Affinity
Database Name Value
PDBBind Kd : 3900 nM