PDB Entry (6afe)
PDB ID: 6afe Resolution: 1.5 Å Exp. Method: X-RAY DIFFRACTION
PMID: 30063823 DOI: 10.1021/acschembio.8b00701
Protein
Protein Name: Parkinson disease protein 7
Uniprot ID/ACC: Q99497 (PARK7_HUMAN) Organism: Homo sapiens (Human)
Gene Symbol: PARK7 Gene ID: 11315
Protein Class: HYDROLASE
Ligand
Ligand Name:   7-(trifluoromethyl)isatin
Canonical SMILES:   c1ccc(C(F)(F)F)c(c12)NC(=O)C2=O
Standard InChI:   InChI=1S/C9H4F3NO2/c10-9(11,12)5-3-1-2-4-6(5)13-8(15)7(4)14/h1-3H,(H,13,14,15)
HET Code:   72T PubChem:   604575
DrugBank:   - ChEMBL:   CHEMBL376435
Molecular Formula:   C9H4F3NO2 Mol. Weight:   215.01941 logP:   1.8402
HBD:   1 HBA:   2
#Rotatable Bonds:   0 TPSA:   46.17
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Hemi(thio)acetalization CYS 106 A 13.68 15.5 Ketone
Binding Affinity
Database Name Value
PDBBind Kd : 4400 nM