PDB Entry (6afd) |
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PDB ID: 6afd | Resolution: 1.48 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 30063823 | DOI: 10.1021/acschembio.8b00701 | |
Protein |
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Protein Name: Parkinson disease protein 7 | |
Uniprot ID/ACC: Q99497 (PARK7_HUMAN) | Organism: Homo sapiens (Human) |
Gene Symbol: PARK7 | Gene ID: 11315 |
Protein Class: HYDROLASE |
Ligand |
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Ligand Name: 7-Methylisatin | ||
Canonical SMILES: c1ccc(C)c(c12)NC(=O)C2=O | ||
Standard InChI: InChI=1S/C9H7NO2/c1-5-3-2-4-6-7(5)10-9(12)8(6)11/h2-4H,1H3,(H,10,11,12) | ||
HET Code: 72S | PubChem: 14313 | |
DrugBank: - | ChEMBL: CHEMBL224884 | |
Molecular Formula: C9H7NO2 | Mol. Weight: 161.04768 | logP: 1.12982 |
HBD: 1 | HBA: 2 | |
#Rotatable Bonds: 0 | TPSA: 46.17 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Hemi(thio)acetalization | CYS 106 | A | 14.27 | 15.36 | Ketone |
Binding Affinity |
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Database Name | Value |
PDBBind | Kd : 3700 nM |