PDB Entry (6afd)
PDB ID: 6afd Resolution: 1.48 Å Exp. Method: X-RAY DIFFRACTION
PMID: 30063823 DOI: 10.1021/acschembio.8b00701
Protein
Protein Name: Parkinson disease protein 7
Uniprot ID/ACC: Q99497 (PARK7_HUMAN) Organism: Homo sapiens (Human)
Gene Symbol: PARK7 Gene ID: 11315
Protein Class: HYDROLASE
Ligand
Ligand Name:   7-Methylisatin
Canonical SMILES:   c1ccc(C)c(c12)NC(=O)C2=O
Standard InChI:   InChI=1S/C9H7NO2/c1-5-3-2-4-6-7(5)10-9(12)8(6)11/h2-4H,1H3,(H,10,11,12)
HET Code:   72S PubChem:   14313
DrugBank:   - ChEMBL:   CHEMBL224884
Molecular Formula:   C9H7NO2 Mol. Weight:   161.04768 logP:   1.12982
HBD:   1 HBA:   2
#Rotatable Bonds:   0 TPSA:   46.17
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Hemi(thio)acetalization CYS 106 A 14.27 15.36 Ketone
Binding Affinity
Database Name Value
PDBBind Kd : 3700 nM