PDB Entry (5kre)
PDB ID: 5kre Resolution: 2.0 Å Exp. Method: X-RAY DIFFRACTION
PMID: 27391855 DOI: 10.1021/acschembio.6b00266
Protein
Protein Name: Lysophospholipase-like protein 1
Uniprot ID/ACC: Q5VWZ2 (LYPL1_HUMAN) Organism: Homo sapiens (Human)
Gene Symbol: LYPLAL1 Gene ID: 127018
Protein Class: HYDROLASE
Ligand
Ligand Name:   4'-{1-[(2R)-2-phenylpiperidine-1-carbonyl]-1H-1,2,4-triazol-3-yl}-[1,1'-biphenyl]-4-carboxylic acid
Canonical SMILES:   OC(=O)c1ccc(cc1)-c1ccc(cc1)-c1ncn(n1)C(=O)N1CCCC[C@@H]1c1ccccc1
Standard InChI:   InChI=1S/C27H24N4O3/c32-26(33)23-15-11-20(12-16-23)19-9-13-22(14-10-19)25-28-18-31(29-25)27(34)30-17-5-4-8-24(30)21-6-2-1-3-7-21/h1-3,6-7,9-16,18,24H,4-5,8,17H2,(H,32,33)/t24-/m1/s1
HET Code:   6WG PubChem:   -
DrugBank:   - ChEMBL:   -
Molecular Formula:   C27H24N4O3 Mol. Weight:   452.18484 logP:   5.5056
HBD:   1 HBA:   5
#Rotatable Bonds:   4 TPSA:   88.32
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Nucleophilic Acyl Substitution SER 124 A 16.93 - Hydrazide
Binding Affinity
Database Name Value
PDBBind IC50 : 59 nM