PDB Entry (5lf0) |
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PDB ID: 5lf0 | Resolution: 2.41 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 27493187 | DOI: 10.1126/science.aaf8993 | |
Protein |
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Protein Name: Proteasome subunit beta type-7 | |
Uniprot ID/ACC: Q99436 (PSB7_HUMAN) | Organism: Homo sapiens (Human) |
Gene Symbol: PSMB7 | Gene ID: 5695 |
Protein Class: HYDROLASE |
Ligand |
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Ligand Name: EPOXOMICIN | ||
Canonical SMILES: CC[C@H](C)[C@H](N(C)C(=O)C)C(=O)N[C@@H]([C@@H](C)CC)C(=O)N[C@@H]([C@@H](C)O)C(=O)N[C@@H](CC(C)C)C(=O)[C@@]1(C)CO1 | ||
Standard InChI: InChI=1S/C28H50N4O7/c1-11-16(5)21(30-27(38)23(17(6)12-2)32(10)19(8)34)25(36)31-22(18(7)33)26(37)29-20(13-15(3)4)24(35)28(9)14-39-28/h15-18,20-23,33H,11-14H2,1-10H3,(H,29,37)(H,30,38)(H,31,36)/t16-,17-,18+,20-,21-,22-,23-,28+/m0/s1 | ||
HET Code: 6VO | PubChem: 11226684 | |
DrugBank: - | ChEMBL: CHEMBL207990 | |
Molecular Formula: C28H50N4O7 | Mol. Weight: 554.3679 | logP: 1.1648 |
HBD: 4 | HBA: 7 | |
#Rotatable Bonds: 16 | TPSA: 157.44 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Cyclohemiaminoacetalization | THR 1 | A | 3.31 | - | Epoxide |
Binding Affinity |
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