PDB Entry (5lf0)
PDB ID: 5lf0 Resolution: 2.41 Å Exp. Method: X-RAY DIFFRACTION
PMID: 27493187 DOI: 10.1126/science.aaf8993
Protein
Protein Name: Proteasome subunit beta type-7
Uniprot ID/ACC: Q99436 (PSB7_HUMAN) Organism: Homo sapiens (Human)
Gene Symbol: PSMB7 Gene ID: 5695
Protein Class: HYDROLASE
Ligand
Ligand Name:   EPOXOMICIN
Canonical SMILES:   CC[C@H](C)[C@H](N(C)C(=O)C)C(=O)N[C@@H]([C@@H](C)CC)C(=O)N[C@@H]([C@@H](C)O)C(=O)N[C@@H](CC(C)C)C(=O)[C@@]1(C)CO1
Standard InChI:   InChI=1S/C28H50N4O7/c1-11-16(5)21(30-27(38)23(17(6)12-2)32(10)19(8)34)25(36)31-22(18(7)33)26(37)29-20(13-15(3)4)24(35)28(9)14-39-28/h15-18,20-23,33H,11-14H2,1-10H3,(H,29,37)(H,30,38)(H,31,36)/t16-,17-,18+,20-,21-,22-,23-,28+/m0/s1
HET Code:   6VO PubChem:   11226684
DrugBank:   - ChEMBL:   CHEMBL207990
Molecular Formula:   C28H50N4O7 Mol. Weight:   554.3679 logP:   1.1648
HBD:   4 HBA:   7
#Rotatable Bonds:   16 TPSA:   157.44
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Cyclohemiaminoacetalization THR 1 A 3.31 - Epoxide
Binding Affinity
-