PDB Entry (5lf6) |
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PDB ID: 5lf6 | Resolution: 2.07 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 27493187 | DOI: 10.1126/science.aaf8993 | |
Protein |
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Protein Name: Proteasome subunit beta type-5 | |
Uniprot ID/ACC: P28074 (PSB5_HUMAN) | Organism: Homo sapiens (Human) |
Gene Symbol: PSMB5 | Gene ID: 5693 |
Protein Class: HYDROLASE |
Ligand |
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Ligand Name: LLY-ketoaldehyde peptide | ||
Canonical SMILES: c1ccccc1COC(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](CC(C)C)C(=O)N[C@H](C(=O)C=O)Cc2ccc(O)cc2 | ||
Standard InChI: InChI=1S/C30H39N3O7/c1-19(2)14-25(28(37)31-24(27(36)17-34)16-21-10-12-23(35)13-11-21)32-29(38)26(15-20(3)4)33-30(39)40-18-22-8-6-5-7-9-22/h5-13,17,19-20,24-26,35H,14-16,18H2,1-4H3,(H,31,37)(H,32,38)(H,33,39)/t24-,25-,26-/m0/s1 | ||
HET Code: 6VF | PubChem: 10460295 | |
DrugBank: - | ChEMBL: - | |
Molecular Formula: C30H39N3O7 | Mol. Weight: 553.2788 | logP: 3.0595 |
HBD: 4 | HBA: 7 | |
#Rotatable Bonds: 15 | TPSA: 150.9 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Cyclohemiaminoacetalization | THR 1 | A | 3.02 | - | Aldehyde |
Binding Affinity |
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