PDB Entry (5lf1) |
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PDB ID: 5lf1 | Resolution: 2.0 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 27493187 | DOI: 10.1126/science.aaf8993 | |
Protein |
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Protein Name: Proteasome subunit beta type-7 | |
Uniprot ID/ACC: Q99436 (PSB7_HUMAN) | Organism: Homo sapiens (Human) |
Gene Symbol: PSMB7 | Gene ID: 5695 |
Protein Class: HYDROLASE |
Ligand |
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Ligand Name: Dihydroeponemycin | ||
Canonical SMILES: CC(C)CCCCC(=O)N[C@@H](CO)C(=O)N[C@@H](CC(C)C)C(=O)[C@]1(CO1)CO | ||
Standard InChI: InChI=1S/C20H36N2O6/c1-13(2)7-5-6-8-17(25)21-16(10-23)19(27)22-15(9-14(3)4)18(26)20(11-24)12-28-20/h13-16,23-24H,5-12H2,1-4H3,(H,21,25)(H,22,27)/t15-,16-,20+/m0/s1 | ||
HET Code: 6VC | PubChem: 10092400 | |
DrugBank: - | ChEMBL: - | |
Molecular Formula: C20H36N2O6 | Mol. Weight: 400.25732 | logP: 0.5412 |
HBD: 4 | HBA: 6 | |
#Rotatable Bonds: 14 | TPSA: 128.26 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Cyclohemiaminoacetalization | THR 1 | V | 29.31 | - | Epoxide |
Binding Affinity |
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