PDB Entry (5lf1)
PDB ID: 5lf1 Resolution: 2.0 Å Exp. Method: X-RAY DIFFRACTION
PMID: 27493187 DOI: 10.1126/science.aaf8993
Protein
Protein Name: Proteasome subunit beta type-7
Uniprot ID/ACC: Q99436 (PSB7_HUMAN) Organism: Homo sapiens (Human)
Gene Symbol: PSMB7 Gene ID: 5695
Protein Class: HYDROLASE
Ligand
Ligand Name:   Dihydroeponemycin
Canonical SMILES:   CC(C)CCCCC(=O)N[C@@H](CO)C(=O)N[C@@H](CC(C)C)C(=O)[C@]1(CO1)CO
Standard InChI:   InChI=1S/C20H36N2O6/c1-13(2)7-5-6-8-17(25)21-16(10-23)19(27)22-15(9-14(3)4)18(26)20(11-24)12-28-20/h13-16,23-24H,5-12H2,1-4H3,(H,21,25)(H,22,27)/t15-,16-,20+/m0/s1
HET Code:   6VC PubChem:   10092400
DrugBank:   - ChEMBL:   -
Molecular Formula:   C20H36N2O6 Mol. Weight:   400.25732 logP:   0.5412
HBD:   4 HBA:   6
#Rotatable Bonds:   14 TPSA:   128.26
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Cyclohemiaminoacetalization THR 1 V 29.31 - Epoxide
Binding Affinity
-