PDB Entry (5lcj) |
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PDB ID: 5lcj | Resolution: 1.78 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 27385078 | DOI: 10.1039/c6mb00367b | |
Protein |
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Protein Name: Mitogen-activated protein kinase 1 | |
Uniprot ID/ACC: P28482 (MK01_HUMAN) | Organism: Homo sapiens (Human) |
Gene Symbol: MAPK1 | Gene ID: 5594 |
Protein Class: TRANSFERASE |
Ligand |
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Ligand Name: (1R,4Z)-cyclooct-4-en-1-yl N-(4-{4-[(5-chloro-4-{[2-(prop-2-enamido)phenyl]amino}pyrimidin-2-yl)amino]pyridin-2-yl}but-3-yn-1-yl)carbamate | ||
Canonical SMILES: C=CC(=O)Nc1ccccc1Nc2nc(ncc2Cl)Nc3ccnc(c3)C#CCCNC(=O)O[C@@H]4CCC/C=C\CC4 | ||
Standard InChI: InChI=1S/C31H32ClN7O3/c1-2-28(40)37-26-15-8-9-16-27(26)38-29-25(32)21-35-30(39-29)36-23-17-19-33-22(20-23)12-10-11-18-34-31(41)42-24-13-6-4-3-5-7-14-24/h2-4,8-9,15-17,19-21,24H,1,5-7,11,13-14,18H2,(H,34,41)(H,37,40)(H2,33,35,36,38,39)/b4-3-/t24-/m0/s1 | ||
HET Code: 6TS | PubChem: - | |
DrugBank: - | ChEMBL: - | |
Molecular Formula: C31H32ClN7O3 | Mol. Weight: 585.2255 | logP: 6.4934 |
HBD: 4 | HBA: 8 | |
#Rotatable Bonds: 9 | TPSA: 130.16 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Michael Addition | CYS 166 | A | 17.03 | 13.73 | Vinyl Carbonyl |
Binding Affinity |
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Database Name | Value |
PDBBind | IC50 : 230 nM |