PDB Entry (2vv4) |
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PDB ID: 2vv4 | Resolution: 2.35 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 19172745 | DOI: 10.1038/NSMB.1474 | |
Protein |
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Protein Name: Peroxisome proliferator-activated receptor gamma | |
Uniprot ID/ACC: P37231 (PPARG_HUMAN) | Organism: Homo sapiens (Human) |
Gene Symbol: PPARG | Gene ID: 5468 |
Protein Class: TRANSCRIPTION REGULATOR |
Ligand |
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Ligand Name: 6-oxooctadecatrienoic acid | ||
Canonical SMILES: CCCCC\C=C/C\C=C\C=C\C(=O)CCCCC(O)=O | ||
Standard InChI: InChI=1S/C18H28O3/c1-2-3-4-5-6-7-8-9-10-11-14-17(19)15-12-13-16-18(20)21/h6-7,9-11,14H,2-5,8,12-13,15-16H2,1H3,(H,20,21)/b7-6-,10-9+,14-11+ | ||
HET Code: 6OB | PubChem: - | |
DrugBank: - | ChEMBL: - | |
Molecular Formula: C18H28O3 | Mol. Weight: 292.20386 | logP: 4.8395 |
HBD: 1 | HBA: 2 | |
#Rotatable Bonds: 13 | TPSA: 54.37 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Michael Addition | CYS 285 | B | 58.38 | 13.46 | Butadienyl Carbonyl |
Binding Affinity |
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