PDB Entry (5l6h) |
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PDB ID: 5l6h | Resolution: 2.3 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 28578874 | DOI: 10.1016/j.str.2017.05.001 | |
Protein |
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Protein Name: Ubiquitin-40S ribosomal protein S31 | |
Uniprot ID/ACC: P05759 (RS31_YEAST) | Organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) |
Gene Symbol: RPS31 | Gene ID: 850864 |
Protein Class: LIGASE |
Ligand |
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Ligand Name: ABPA3 | ||
Canonical SMILES: C#Cc1cccc(c1)Nc(ncn2)c(c23)ncn3[C@H]4[C@H](O)[C@H](O)[C@H](O4)COS(=O)(=O)N | ||
Standard InChI: InChI=1S/C18H18N6O6S/c1-2-10-4-3-5-11(6-10)23-16-13-17(21-8-20-16)24(9-22-13)18-15(26)14(25)12(30-18)7-29-31(19,27)28/h1,3-6,8-9,12,14-15,18,25-26H,7H2,(H2,19,27,28)(H,20,21,23)/t12-,14-,15-,18-/m1/s1 | ||
HET Code: 6O2 | PubChem: 126961737 | |
DrugBank: - | ChEMBL: - | |
Molecular Formula: C18H18N6O6S | Mol. Weight: 446.10086 | logP: -0.6095 |
HBD: 4 | HBA: 11 | |
#Rotatable Bonds: 6 | TPSA: 174.71 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Nucleophilic Acyl Substitution | GLY 76 | D | 18.76 | - | Sulfamate |
Binding Affinity |
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Database Name | Value |
PDBBind | IC50 : 240 nM |