PDB Entry (5e1i) |
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PDB ID: 5e1i | Resolution: 2.0 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 27820797 | DOI: 10.1038/nchembio.2237 | |
Protein |
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Protein Name: L,D-transpeptidase 2 | |
Uniprot ID/ACC: I6Y9J2 (LDT2_MYCTU) | Organism: Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) |
Gene Symbol: ldtB | Gene ID: 888160 |
Protein Class: TRANSFERASE |
Ligand |
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Ligand Name: Carbapenem T210 | ||
Canonical SMILES: CSC1=C(N2[C@@H]([C@@H]([C@@H](C)O)C2=O)[C@H]1C)C(O)=O | ||
Standard InChI: InChI=1S/C11H15NO4S/c1-4-7-6(5(2)13)10(14)12(7)8(11(15)16)9(4)17-3/h4-7,13H,1-3H3,(H,15,16)/t4-,5-,6-,7-/m1/s1 | ||
HET Code: 6B8 | PubChem: 57357591 | |
DrugBank: - | ChEMBL: - | |
Molecular Formula: C11H15NO4S | Mol. Weight: 257.07217 | logP: 0.5031 |
HBD: 2 | HBA: 4 | |
#Rotatable Bonds: 3 | TPSA: 77.84 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Beta-Lactam Addition | CYS 354 | A | 20.6 | 12.35 | Beta-Lactam |
Binding Affinity |
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