PDB Entry (5e1i)
PDB ID: 5e1i Resolution: 2.0 Å Exp. Method: X-RAY DIFFRACTION
PMID: 27820797 DOI: 10.1038/nchembio.2237
Protein
Protein Name: L,D-transpeptidase 2
Uniprot ID/ACC: I6Y9J2 (LDT2_MYCTU) Organism: Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
Gene Symbol: ldtB Gene ID: 888160
Protein Class: TRANSFERASE
Ligand
Ligand Name:   Carbapenem T210
Canonical SMILES:   CSC1=C(N2[C@@H]([C@@H]([C@@H](C)O)C2=O)[C@H]1C)C(O)=O
Standard InChI:   InChI=1S/C11H15NO4S/c1-4-7-6(5(2)13)10(14)12(7)8(11(15)16)9(4)17-3/h4-7,13H,1-3H3,(H,15,16)/t4-,5-,6-,7-/m1/s1
HET Code:   6B8 PubChem:   57357591
DrugBank:   - ChEMBL:   -
Molecular Formula:   C11H15NO4S Mol. Weight:   257.07217 logP:   0.5031
HBD:   2 HBA:   4
#Rotatable Bonds:   3 TPSA:   77.84
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Beta-Lactam Addition CYS 354 A 20.6 12.35 Beta-Lactam
Binding Affinity
-