PDB Entry (2zz6) |
||
| ||
PDB ID: 2zz6 | Resolution: 1.66 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 19236876 | DOI: 10.1016/j.jmb.2009.02.037 | |
Protein |
|
Protein Name: Orotidine 5'-phosphate decarboxylase | |
Uniprot ID/ACC: O26232 (PYRF_METTH) | Organism: Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) (Methanobacterium thermoautotrophicum) |
Gene Symbol: pyrF | Gene ID: - |
Protein Class: LYASE |
Ligand |
||
Ligand Name: 6-azido-UMP | ||
Canonical SMILES: O[C@@H]1[C@@H](COP(O)(O)=O)O[C@H]([C@@H]1O)n1c(cc(=O)[nH]c1=O)N=[N+]=[N-] | ||
Standard InChI: InChI=1S/C9H12N5O9P/c10-13-12-4-1-5(15)11-9(18)14(4)8-7(17)6(16)3(23-8)2-22-24(19,20)21/h1,3,6-8,16-17H,2H2,(H,11,15,18)(H2,19,20,21)/t3-,6-,7-,8-/m1/s1 | ||
HET Code: 6AZ | PubChem: 11843561 | |
DrugBank: - | ChEMBL: CHEMBL463623 | |
Molecular Formula: C9H12N5O9P | Mol. Weight: 365.03726 | logP: -1.7931 |
HBD: 5 | HBA: 9 | |
#Rotatable Bonds: 5 | TPSA: 220.07 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Nucleophilic Aromatic Substitution | LYS 72 | A | 22.12 | 9.17 | Azide |
Binding Affinity |
|
Database Name | Value |
PDBBind | Ki : 190 nM |
BindingDB | Ki : 190 nM , Ki : 200 nM |