PDB Entry (5idk)
PDB ID: 5idk Resolution: 1.5 Å Exp. Method: X-RAY DIFFRACTION
PMID: 27966962 DOI: 10.1021/acs.jmedchem.6b01021
Protein
Protein Name: Genome polyprotein
Uniprot ID/ACC: P06935 (POLG_WNV) Organism: West Nile virus (WNV)
Gene Symbol: - Gene ID: 912267
Protein Class: HYDROLASE
Ligand
Ligand Name:   {4‐[(2S)‐2‐{[(1R)‐4‐{[amino(iminio)methyl]amino}‐1‐(dihydroxyboranyl)butyl]carbamoyl}‐2‐(phenylformamido)ethyl]phenyl}methanaminium
Canonical SMILES:   NCc1ccc(C[C@H](NC(=O)c2ccccc2)C(=O)N[C@@H](CCCNC(N)=N)B(O)O)cc1
Standard InChI:   InChI=1S/C22H31BN6O4/c24-14-16-10-8-15(9-11-16)13-18(28-20(30)17-5-2-1-3-6-17)21(31)29-19(23(32)33)7-4-12-27-22(25)26/h1-3,5-6,8-11,18-19,32-33H,4,7,12-14,24H2,(H,28,30)(H,29,31)(H4,25,26,27)/t18-,19-/m0/s1
HET Code:   6A8 PubChem:   134139660
DrugBank:   - ChEMBL:   CHEMBL3919119
Molecular Formula:   C22H31BN6O4 Mol. Weight:   454.24997 logP:   -0.75353
HBD:   8 HBA:   6
#Rotatable Bonds:   12 TPSA:   186.58
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Borylation SER 1135 A 19.7 - Boronic Acid
Binding Affinity
-