PDB Entry (5i23)
PDB ID: 5i23 Resolution: 1.95 Å Exp. Method: X-RAY DIFFRACTION
PMID: 27280170 DOI: 10.1021/acscentsci.6b00057
Protein
Protein Name: Oligosaccharide 4-alpha-D-glucosyltransferase
Uniprot ID/ACC: B3PEE6 (OL4AG_CELJU) Organism: Cellvibrio japonicus (strain Ueda107) (Pseudomonas fluorescens subsp. cellulosa)
Gene Symbol: agd31B Gene ID: -
Protein Class: HYDROLASE
Ligand
Ligand Name:   CF022
Canonical SMILES:   OC[C@H]1[C@H]2[C@@H]([C@H](O)[C@@H](O)[C@@H]1O)N2CCCCCCCCN=[N+]=[N-]
Standard InChI:   InChI=1S/C15H28N4O4/c16-18-17-7-5-3-1-2-4-6-8-19-11-10(9-20)13(21)15(23)14(22)12(11)19/h10-15,20-23H,1-9H2/t10-,11-,12-,13+,14-,15-,19?/m0/s1
HET Code:   66V PubChem:   -
DrugBank:   - ChEMBL:   -
Molecular Formula:   C15H28N4O4 Mol. Weight:   328.21106 logP:   0.3949
HBD:   4 HBA:   6
#Rotatable Bonds:   10 TPSA:   132.69
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Aziridine Opening ASP 412 A 23.16 8.42 Aziridine
Binding Affinity
Database Name Value
PDBBind IC50 : 51.7 nM