PDB Entry (5i24)
PDB ID: 5i24 Resolution: 1.85 Å Exp. Method: X-RAY DIFFRACTION
PMID: 27280170 DOI: 10.1021/acscentsci.6b00057
Protein
Protein Name: Oligosaccharide 4-alpha-D-glucosyltransferase
Uniprot ID/ACC: B3PEE6 (OL4AG_CELJU) Organism: Cellvibrio japonicus (strain Ueda107) (Pseudomonas fluorescens subsp. cellulosa)
Gene Symbol: agd31B Gene ID: -
Protein Class: HYDROLASE
Ligand
Ligand Name:   CF021
Canonical SMILES:   OC[C@@H]([C@@H]([C@H]12)N2)[C@@H](O)[C@H](O)[C@H]1O
Standard InChI:   InChI=1S/C7H13NO4/c9-1-2-3-4(8-3)6(11)7(12)5(2)10/h2-12H,1H2/t2-,3-,4+,5+,6-,7-/m0/s1
HET Code:   66U PubChem:   -
DrugBank:   - ChEMBL:   -
Molecular Formula:   C7H13NO4 Mol. Weight:   175.08446 logP:   -2.9684
HBD:   5 HBA:   5
#Rotatable Bonds:   1 TPSA:   102.86
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Aziridine Opening ASP 412 A 21.93 8.31 Aziridine
Binding Affinity
Database Name Value
PDBBind IC50 : 37.8 nM