PDB Entry (1pwd) |
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PDB ID: 1pwd | Resolution: 1.2 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 15581896 | DOI: 10.1016/j.jmb.2004.10.076 | |
Protein |
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Protein Name: D-alanyl-D-alanine carboxypeptidase | |
Uniprot ID/ACC: P15555 (DAC_STRSR) | Organism: Streptomyces sp. (strain R61) |
Gene Symbol: - | Gene ID: - |
Protein Class: HYDROLASE |
Ligand |
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Ligand Name: cephalosporin C | ||
Canonical SMILES: CC(=O)OCC1=C(N2[C@H](SC1)[C@H](NC(=O)CCC[C@@H](N)C(O)=O)C2=O)C(O)=O | ||
Standard InChI: InChI=1S/C16H21N3O8S/c1-7(20)27-5-8-6-28-14-11(13(22)19(14)12(8)16(25)26)18-10(21)4-2-3-9(17)15(23)24/h9,11,14H,2-6,17H2,1H3,(H,18,21)(H,23,24)(H,25,26)/t9-,11-,14-/m1/s1 | ||
HET Code: 0MU | PubChem: 65536 | |
DrugBank: DB03313 | ChEMBL: CHEMBL482858 | |
Molecular Formula: C16H21N3O8S | Mol. Weight: 415.10495 | logP: -1.1297 |
HBD: 4 | HBA: 8 | |
#Rotatable Bonds: 9 | TPSA: 176.33 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Beta-Lactam Addition | SER 62 | A | 19.07 | - | Beta-Lactam |
Binding Affinity |
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