PDB Entry (1pwd)
PDB ID: 1pwd Resolution: 1.2 Å Exp. Method: X-RAY DIFFRACTION
PMID: 15581896 DOI: 10.1016/j.jmb.2004.10.076
Protein
Protein Name: D-alanyl-D-alanine carboxypeptidase
Uniprot ID/ACC: P15555 (DAC_STRSR) Organism: Streptomyces sp. (strain R61)
Gene Symbol: - Gene ID: -
Protein Class: HYDROLASE
Ligand
Ligand Name:   cephalosporin C
Canonical SMILES:   CC(=O)OCC1=C(N2[C@H](SC1)[C@H](NC(=O)CCC[C@@H](N)C(O)=O)C2=O)C(O)=O
Standard InChI:   InChI=1S/C16H21N3O8S/c1-7(20)27-5-8-6-28-14-11(13(22)19(14)12(8)16(25)26)18-10(21)4-2-3-9(17)15(23)24/h9,11,14H,2-6,17H2,1H3,(H,18,21)(H,23,24)(H,25,26)/t9-,11-,14-/m1/s1
HET Code:   0MU PubChem:   65536
DrugBank:   DB03313 ChEMBL:   CHEMBL482858
Molecular Formula:   C16H21N3O8S Mol. Weight:   415.10495 logP:   -1.1297
HBD:   4 HBA:   8
#Rotatable Bonds:   9 TPSA:   176.33
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Beta-Lactam Addition SER 62 A 19.07 - Beta-Lactam
Binding Affinity
-