PDB Entry (5e0j)
PDB ID: 5e0j Resolution: 1.2 Å Exp. Method: X-RAY DIFFRACTION
PMID: 27235842 DOI: 10.1016/j.ejmech.2016.04.013
Protein
Protein Name: Genome polyprotein
Uniprot ID/ACC: Q83883 (POLG_NVN68) Organism: Norwalk virus (strain GI/Human/United States/Norwalk/1968) (Hu/NV/NV/1968/US)
Gene Symbol: ORF1 Gene ID: 1491970
Protein Class: HYDROLASE
Ligand
Ligand Name:   benzyl N-[(12S,15S,18S)-15-(cyclohexylmethyl)-12-formyl-9,14,17-trioxo-1,8,13,16,21,22-hexaazabicyclo[18.2.1]tricosa-20(23),21-dien-18-yl]carbamate
Canonical SMILES:   c12cn(nn2)CCCCCCNC(=O)CC[C@@H](C=O)NC(=O)[C@H](CC3CCCCC3)NC(=O)[C@H](C1)NC(=O)OCc4ccccc4
Standard InChI:   InChI=1S/C33H47N7O6/c41-22-26-15-16-30(42)34-17-9-1-2-10-18-40-21-27(38-39-40)20-29(37-33(45)46-23-25-13-7-4-8-14-25)32(44)36-28(31(43)35-26)19-24-11-5-3-6-12-24/h4,7-8,13-14,21-22,24,26,28-29H,1-3,5-6,9-12,15-20,23H2,(H,34,42)(H,35,43)(H,36,44)(H,37,45)/t26-,28-,29-/m0/s1
HET Code:   5LJ PubChem:   127043111
DrugBank:   - ChEMBL:   CHEMBL3827800
Molecular Formula:   C33H47N7O6 Mol. Weight:   637.35876 logP:   2.7249
HBD:   4 HBA:   9
#Rotatable Bonds:   6 TPSA:   173.41
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Hemi(thio)acetalization CYS 139 A 16.84 13.95 Aldehyde
Binding Affinity
Database Name Value
PDBBind IC50 : 6100 nM